chr1ASW1000G: Example genotype data in 'vcf' format

In hapFabia: hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data

Description

Genotype data in vcf format. Contains chr1ASW1000G of class character.

A vcf file is produced by write(chr1ASW1000G,file="chr1ASW1000G.vcf").

Usage

chr1ASW1000G

Format

String chr1ASW1000G of class character.

Source

1000Genomes phase 1 release v3; chromosome 1, only ASW and only few SNVs.

References

S. Hochreiter et al., ‘FABIA: Factor Analysis for Bicluster Acquisition’, Bioinformatics 26(12):1520-1527, 2010.

See Also

IBDsegment-class, IBDsegmentList-class, analyzeIBDsegments, compareIBDsegmentLists, extractIBDsegments, findDenseRegions, hapFabia, hapFabiaVersion, hapRes, chr1ASW1000G, IBDsegmentList2excel, identifyDuplicates, iterateIntervals, makePipelineFile, matrixPlot, mergeIBDsegmentLists, mergedIBDsegmentList, plotIBDsegment, res, setAnnotation, setStatistics, sim, simu, simulateIBDsegmentsFabia, simulateIBDsegments, split_sparse_matrix, toolsFactorizationClass, vcftoFABIA

hapFabia documentation built on Nov. 8, 2020, 5:17 p.m.