Files in hipathia

HiPathia: High-throughput Pathway Analysis

README.md R/save.R R/main.R R/load.R R/utils.R R/stats.R R/chart.R R/load_sif.R R/data.R R/functions.R R/testing.R vignettes/hipathia-vignette.Rmd man/create_report.Rd man/get_pathways_summary.Rd man/multiple_pca_plot.Rd man/load_gobp_net.Rd man/top_pathways.Rd man/visualize_report.Rd man/load_mgi.Rd man/save_results.Rd man/is_accepted_species.Rd man/load_entrez_hgnc.Rd man/mgi_from_sif.Rd man/load_annots.Rd man/normalize_data.Rd man/igraphs_upgrade.Rd man/normalize_paths.Rd man/annotate_paths.Rd man/get_pathway_functions.Rd man/get_pathways_annotations.Rd man/load_gobp_frame.Rd man/get_go_names.Rd man/get_pathways_list.Rd man/quantify_terms.Rd man/do_pca.Rd man/comp.Rd man/load_pseudo_mgi.Rd man/get_paths_data.Rd man/translate_matrix.Rd man/translate_data.Rd man/results.Rd man/load_pathways.Rd man/pathway_comparison_plot.Rd man/brca_data.Rd man/brca_design.Rd man/go_vals.Rd man/hipathia.Rd man/paths_to_go_ancestor.Rd man/brca.Rd man/get_node_names.Rd man/do_wilcoxon.Rd man/hhead.Rd man/heatmap_plot.Rd man/load_xref.Rd man/load_annofuns.Rd man/pca_plot.Rd man/path_vals.Rd man/get_nodes_data.Rd man/get_path_names.Rd man/node_color_per_de.Rd man/node_color.Rd man/get_highest_sig_ancestor.Rd man/exp_data.Rd tests/testthat.R tests/testthat/test-translate-matrix.R tests/testthat/test-normalization.R tests/testthat/test-create-report.R tests/testthat/test-load-pathways.R tests/testthat/test-wilcoxon.R tests/testthat/test-hipathia.R tests/testthat/test-hhead.R tests/testthat/test-quantify.R tests/testthat/test-path-list.R tests/testthat/test-color-node.R tests/testthat/test-normalize-paths.R tests/testthat/test-path-names.R tests/testthat/test-path-summary.R tests/testthat/test-path-annots.R inst/doc/hipathia-vignette.R inst/doc/hipathia-vignette.Rmd inst/doc/hipathia-vignette.pdf