top_pathways: Computes pathway significance

In hipathia: HiPathia: High-throughput Pathway Analysis

Description

Performs a test for each pathway checking if the number of significant paths is significant, compared to not having any of the paths as significant.

Usage

top_pathways(comp)

Arguments

comp	Comparison data frame as returned by the do_wilcoxon function.

Value

Table with the names of the pathways and their p-value for the Fisher test comparing the proportion of significant subpaths vs. 0.

Examples

data(comp)
top_pathways(comp)

hipathia documentation built on Nov. 8, 2020, 7:52 p.m.