get_node_names: Tranlates node IDs to node names
In hipathia: HiPathia: High-throughput Pathway Analysis
Description
Usage
Arguments
Value
Examples
Description
Translates the node IDs to readable and comprensible names.
The names of the nodes are encoded
as "pathway: name", where "pathway" is the pathway to
which the node belongs and "node" is the name of
the node. Nodes may include more genes than the one depicted in the name.
Usage
1
get_node_names(metaginfo, names, maxchar = NULL)
Arguments
metaginfo
Pathways object
names
Character vector with the subpathway IDs to be translated
maxchar
Integer, describes the number of maximum characters to
be shown. By default no filter is applied.
Value
A character vector including the readable names of the
subpathways IDs, in the same order as provided.
Examples
1
2
3
4
5
data(results)
pathways_list <- c("hsa03320", "hsa04012")
pathways <- load_pathways(species = "hsa", pathways_list)
node_vals <- get_nodes_data(results)
translated_names <- get_node_names(pathways, rownames(node_vals))
hipathia documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Usage Arguments Value Examples
Description
Translates the node IDs to readable and comprensible names.
The names of the nodes are encoded as "pathway: name", where "pathway" is the pathway to which the node belongs and "node" is the name of the node. Nodes may include more genes than the one depicted in the name.
Usage
1 | get_node_names(metaginfo, names, maxchar = NULL)
|
Arguments
metaginfo |
Pathways object |
names |
Character vector with the subpathway IDs to be translated |
maxchar |
Integer, describes the number of maximum characters to be shown. By default no filter is applied. |
Value
A character vector including the readable names of the subpathways IDs, in the same order as provided.
Examples
1 2 3 4 5 | data(results)
pathways_list <- c("hsa03320", "hsa04012")
pathways <- load_pathways(species = "hsa", pathways_list)
node_vals <- get_nodes_data(results)
translated_names <- get_node_names(pathways, rownames(node_vals))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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