load_pseudo_mgi: Loads object with pseudo graph information
In hipathia: HiPathia: High-throughput Pathway Analysis
Description
Usage
Arguments
Value
Description
Loads object with pseudo graph information
Usage
1
load_pseudo_mgi(species, group_by)
Arguments
species
Species of the samples.
group_by
How to group the subpathways to be visualized. By default
they are grouped by the pathway to which they belong. Available groupings
include "uniprot", to group subpathways by their annotated Uniprot functions,
"GO", to group subpathways by their annotated GO terms, and "genes", to group
subpathways by the genes they include.
#@examples
#load_pseudo_mgi("hsa", "uniprot")
Value
Pseudo graph information object
hipathia documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Usage Arguments Value
Description
Loads object with pseudo graph information
Usage
1 | load_pseudo_mgi(species, group_by)
|
Arguments
species |
Species of the samples. |
group_by |
How to group the subpathways to be visualized. By default they are grouped by the pathway to which they belong. Available groupings include "uniprot", to group subpathways by their annotated Uniprot functions, "GO", to group subpathways by their annotated GO terms, and "genes", to group subpathways by the genes they include. #@examples #load_pseudo_mgi("hsa", "uniprot") |
Value
Pseudo graph information object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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