get_highest_sig_ancestor: Get highest common GO ancestor of GO annotations
In hipathia: HiPathia: High-throughput Pathway Analysis
Description
Usage
Arguments
Value
Description
Get highest common GO ancestor of GO annotations
Usage
1
2
get_highest_sig_ancestor(go_terms, go_comp, metaginfo, unique = TRUE,
pval = 0.05)
Arguments
go_terms
GO terms for which the highest common ancestors are
to be looked for.
go_comp
Wilcoxon comparison of the matrix of GO values as returned
by do_wilcoxon.
metaginfo
Pathways object
unique
Boolean, whether to return only one highest significant GO
ancestor or all of them. By default, TRUE.
pval
P-value cut-off. Default values is set to 0.05.
Value
highest common ancestors
#@export
hipathia documentation built on Nov. 8, 2020, 7:52 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Get highest common GO ancestor of GO annotations
Usage
1 2 | get_highest_sig_ancestor(go_terms, go_comp, metaginfo, unique = TRUE,
pval = 0.05)
|
Arguments
go_terms |
GO terms for which the highest common ancestors are to be looked for. |
go_comp |
Wilcoxon comparison of the matrix of GO values as returned
by |
metaginfo |
Pathways object |
unique |
Boolean, whether to return only one highest significant GO ancestor or all of them. By default, TRUE. |
pval |
P-value cut-off. Default values is set to 0.05. |
Value
highest common ancestors
#@export
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.