icnv_output_to_gb: Convert icnv.output to input for Genome Browser.
In iCNV: Integrated Copy Number Variation detection

Description Usage Arguments Value Examples

We could add the output to custom tracks on Genome Browser. Remeber to choose human assembly matches your input data. We color coded the CNVs to make it as consistant as IGV. To show color, click 'User Track after submission', and edit config to 'visibility=2 itemRgb="On"'. Color see Github page for more example.

1	icnv_output_to_gb(chr = numeric(), icnv.output)

`chr`	CNV chromosome. Type integer.
`icnv.output`	output from output_list_function

matrix for Genome browser

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icnv.output <- output_list(icnv_res=icnv_res0,sampleid=sampname_qc, CN=0, min_size=10000)
gb_input <- icnv_output_to_gb(chr=22,icnv.output)
write.table(gb_input,file='icnv_res_gb_chr22.tab',quote=FALSE,col.names=FALSE,row.names=FALSE)