plotindi: Individual sample plot

Description Usage Arguments Value Examples

View source: R/plotindi_function.R

Description

Plot relationship between platforms and features for each individual. Only work for muli-platform inference.

Usage

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Arguments

ngs_plr

A list of NGS intensity data. Each entry is an individual. If no NGS data, no need to specify.

snp_lrr

A list of SNP array intensity data. Each entry is an individual. If no SNP array data, no need to specify.

ngs_baf

A list of NGS BAF data. Each entry is an individual. If no NGS data, no need to specify.

snp_baf

A list of SNP array BAF data. Each entry is an individual. If no SNP array data, no need to specify.

ngs_plr.pos

A list of NGS intensity postion data. Each entry is an individual with dimension= (#of bins or exons, 2(start and end position)). If no NGS data, no need to specify.

snp_lrr.pos

A list of SNP array intensity postion data. Each entry is an individual with length=#of SNPs. If no SNP array data, no need to specify.

ngs_baf.pos

A list of NGS BAF postion data. Each entry is an individual with length=#of BAFs. If no NGS data, no need to specify.

snp_baf.pos

A list of SNP array BAF postion data. Each entry is an individual with length=#of BAFs. If no SNP array data, no need to specify.

icnvres

CNV inference result. The output from iCNV_detection()

I

Indicating the position of the individual to plot. Type integer.

h

start position of this plot. Default Start of the whole chromosome

t

end position of this plot. Default End of the whole chromosome

Value

void

Examples

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iCNV documentation built on Nov. 8, 2020, 11:12 p.m.