output_list: Generate ouput list.

In iCNV: Integrated Copy Number Variation detection

Description

Generate human readable output from result calculated by iCNV_detection function

Usage

output_list(icnv_res, sampleid = NULL, CN = 0, min_size = 0)

Arguments

icnv_res	CNV inference result. Output from iCNV_detection()
sampleid	the name of the sample, same order as the input
CN	An indicator variable with value 0,1 for whether exact copy number inferred in iCNV_detection. 0 no exact CN, 1 exact CN. Type integer. Default 0.
min_size	A integer which indicate the minimum length of the CNV you are interested in. This could remove super short CNVs due to noise. Type integer. Default 0. Recommend 1000.

Value

output CNV list of each individual

Examples

icnv.output <- output_list(icnv_res=icnv_res0,sampleid=sampname_qc, CN=0)

iCNV documentation built on Nov. 8, 2020, 11:12 p.m.