encode_gwas: Change encoding of dataset
In martini: GWAS Incorporating Networks
Description
Usage
Arguments
Value
Examples
Description
Converts the encoding from additive to another one.
Usage
1
encode_gwas(X, encoding)
Arguments
X
Genotype matrix with SNPs encoded as 0 for major homozygous, 1 for
heterozygous and 2 for minor homozygous.
encoding
Genetic model assumed: additive, recessive, dominant or
codominant.
Value
A genotype matrix
Examples
1
2
X <- as(minigwas[["genotypes"]], "numeric")
martini:::encode_gwas(X, "recessive")
martini documentation built on Nov. 8, 2020, 5:39 p.m.
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Description Usage Arguments Value Examples
Description
Converts the encoding from additive to another one.
Usage
1 | encode_gwas(X, encoding)
|
Arguments
X |
Genotype matrix with SNPs encoded as 0 for major homozygous, 1 for heterozygous and 2 for minor homozygous. |
encoding |
Genetic model assumed: additive, recessive, dominant or codominant. |
Value
A genotype matrix
Examples
1 2 | X <- as(minigwas[["genotypes"]], "numeric")
martini:::encode_gwas(X, "recessive")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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