get_evo_settings: Get evo settings.

In martini: GWAS Incorporating Networks

Description

Creates a list composed by all evo settings, with the values provided by the user, or the default ones if none is provided.

Usage

get_evo_settings(
  associationScore = "chi2",
  modelScore = "bic",
  etas = numeric(),
  lambdas = numeric(),
  debug = FALSE
)

Arguments

associationScore	Association score to measure association between genotype and phenotype. Possible values: chi2 (default), glm.
modelScore	Model selection criterion Possible values: consistency, bic (default), aic, aicc, mbic.
etas	Numeric vector with the etas to explore in the grid search. If ommited, it's automatically created based on the association scores.
lambdas	Numeric vector with the lambdas to explore in the grid search. If ommited, it's automatically created based on the association scores.
debug	Display additional information. Possible values: TRUE, FALSE (default).

Value

A list of evo settings.

Examples

martini:::get_evo_settings()
martini:::get_evo_settings(associationScore = "skat")

martini documentation built on Nov. 8, 2020, 5:39 p.m.