parse_scones_settings: Parse 'scones.cv' settings.

In martini: GWAS Incorporating Networks

Description

Creates a list composed by all scones.cv settings, with the values provided by the user, or the default ones if none is provided.

Usage

parse_scones_settings(
  score = "chi2",
  criterion = "consistency",
  etas = numeric(),
  lambdas = numeric(),
  c = numeric()
)

Arguments

score	Association score to measure association between genotype and phenotype. Possible values: chi2 (default), glm.
criterion	String with the function to measure the quality of a split. Possible values: consistency (default), bic, aic, aicc.
etas	Numeric vector with the etas to explore in the grid search. If ommited, it's automatically created based on the association scores.
lambdas	Numeric vector with the lambdas to explore in the grid search. If ommited, it's automatically created based on the association scores.
c	Numeric vector with the association scores of the SNPs. Specify it to automatically an appropriate range of etas and lambas.

Value

A list of evo settings.

Examples

martini:::parse_scones_settings(etas = c(1,2,3), lambdas = c(4,5,6))
martini:::parse_scones_settings(c = c(1,10,100), score = "glm")

martini documentation built on Nov. 8, 2020, 5:39 p.m.