snp2gene: Map SNPs to genes.
In martini: GWAS Incorporating Networks
Description
Usage
Arguments
Value
Description
Maps SNPs from a GWAS experiment to genes.
Usage
1
snp2gene(gwas, organism = 9606, flank = 0)
Arguments
gwas
A SnpMatrix object with the GWAS information.
organism
Organism: hsapiens represents human, athaliana for
Arabidopsis thaliana, etc.
flank
A number with the flanking regions around genes to be considered
part of the gene i.e. SNPs mapped to them will be considered mapped to the
gene.
Value
A data.frame with two columns: one for the SNP and another for the
gene it has been mapped to.
martini documentation built on Nov. 8, 2020, 5:39 p.m.
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Description Usage Arguments Value
Description
Maps SNPs from a GWAS experiment to genes.
Usage
1 | snp2gene(gwas, organism = 9606, flank = 0)
|
Arguments
gwas |
A SnpMatrix object with the GWAS information. |
organism |
Organism: hsapiens represents human, athaliana for Arabidopsis thaliana, etc. |
flank |
A number with the flanking regions around genes to be considered part of the gene i.e. SNPs mapped to them will be considered mapped to the gene. |
Value
A data.frame with two columns: one for the SNP and another for the gene it has been mapped to.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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