simulate_causal_snps: Simulate causal SNPs
In martini: GWAS Incorporating Networks
Description
Usage
Arguments
Value
Examples
Description
Selects randomly interconnected genes as causal, then selects a
proportion of them as causal.
Usage
1
simulate_causal_snps(net, ngenes = 20, pcausal = 1)
Arguments
net
An igraph gene-interaction (GI) network that connects the SNPs.
ngenes
Number of causal genes.
pcausal
Number between 0 and 1, proportion of the SNPs in causal genes
that are causal themselves.
Value
A vector with the ids of the simulated causal SNPs.
Examples
1
2
gi <- get_GI_network(minigwas, snpMapping = minisnpMapping, ppi = minippi)
simulate_causal_snps(gi, ngenes=2)
martini documentation built on Nov. 8, 2020, 5:39 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Selects randomly interconnected genes as causal, then selects a proportion of them as causal.
Usage
1 | simulate_causal_snps(net, ngenes = 20, pcausal = 1)
|
Arguments
net |
An igraph gene-interaction (GI) network that connects the SNPs. |
ngenes |
Number of causal genes. |
pcausal |
Number between 0 and 1, proportion of the SNPs in causal genes that are causal themselves. |
Value
A vector with the ids of the simulated causal SNPs.
Examples
1 2 | gi <- get_GI_network(minigwas, snpMapping = minisnpMapping, ppi = minippi)
simulate_causal_snps(gi, ngenes=2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.