Files in martini
GWAS Incorporating Networks

LICENSE
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/scones_usage.html
inst/doc/simulate_phenotype.Rmd inst/doc/scones_usage.Rmd inst/doc/simulate_phenotype.R inst/doc/scones_usage.R
inst/doc/simulate_phenotype.html
inst/include/martini.h
inst/include/martini_RcppExports.h
vignettes/bibliography.bib
vignettes/simulate_phenotype.Rmd vignettes/scones_usage.Rmd
vignettes/example_causal_subnetworks.png
R/modules.R R/ld.R R/networks.R R/datasets.R R/NAMESPACE_exports.R R/utils.R R/RcppExports.R R/scones.R R/legacy.R R/simulation.R
src/run_scones.cpp
src/RcppExports.cpp
src/Makevars
src/evo.cpp
man/permute_snpMatrix.Rd man/get_evo_settings.Rd man/subvert.Rd man/minippi.Rd man/get_ppi.Rd man/ldweight_edges.Rd man/minisnpMapping.Rd man/get_GI_network.Rd man/scones.cv.Rd man/search_cones.Rd man/snp2gene.Rd man/calculateE.Rd man/encode_gwas.Rd man/scones.Rd man/parse_scones_settings.Rd man/check_installed.Rd man/single_snp_association.Rd man/subnet.Rd man/evo.Rd man/test_cones_modules.Rd man/get_GM_network.Rd man/simulate_causal_snps.Rd man/minigwas.Rd man/get_GS_network.Rd man/run_scones.Rd man/simulate_phenotype.Rd man/calculateG.Rd man/arrange_covars.Rd man/get_snp_modules.Rd man/is_coherent.Rd man/score_fold.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_single_snp_association.R tests/testthat/test_test_cones_modules.R tests/testthat/test_parse_scones_settings.R tests/testthat/test_get_snp_modules.R tests/testthat/test_scones.R tests/testthat/test_snp2gene.R tests/testthat/test_simulate_causal_snps.R tests/testthat/test_ldweight_edges.R tests/testthat/minimum_data.R tests/testthat/test_subnet.R tests/testthat/test_get_GS_network.R tests/testthat/test_get_GI_network.R tests/testthat/test_get_evo_settings.R tests/testthat/test_check_installed.R tests/testthat/test_scones.cv.R tests/testthat/test_search_cones.R tests/testthat/test_subvert.R tests/testthat/test_simulate_phenotype.R tests/testthat/test_get_ppi.R tests/testthat/test_evo.R tests/testthat/test_is_coherent.R tests/testthat/test_calculateG.R tests/testthat/big_network.R tests/testthat/test_run_scones.R tests/testthat/test_get_GM_network.R
tests/testthat/examplegwas.rda
tests/testthat/test_encode_gwas.R tests/testthat/test_calculateE.R
data/minisnpMapping.rda
data/minippi.rda
data/minigwas.rda
martini documentation built on Oct. 31, 2019, 10:34 a.m.