annotateFeatures-MgDb-method: Annotating metagenome data with taxonomic information

Description Usage Arguments Value Examples

Description

This method is used to create a mgFeatures class object

Usage

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annotateFeatures(mgdb, ...)

## S4 method for signature 'MgDb'
annotateFeatures(mgdb, query)

Arguments

mgdb

MgDb class object

...

additional arguments passed to select function

query

A data frame with experimental data to annotate with taxonomic information, must include column named "Key" with databse ids. Or a vector of database Keys of entries to include in mgFeatures-class object.

Value

mgFeatures-class object

Examples

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## MgDb with mock community ids
gg85 <- get_gg13.8_85MgDb()
## generating mgFeatures object
data(mock_query_df)
mock_mgF <- annotateFeatures(gg85, mock_query_df)

metagenomeFeatures documentation built on May 2, 2018, 4:13 a.m.