metagenomeFeatures
Exploration of marker-gene sequence taxonomic annotations

Package index
Search the metagenomeFeatures package
Vignettes
Functions
60
Source code
29
Man pages
16
Home
/
Bioconductor
/
metagenomeFeatures
/
mgFeatures-accessors: mgFeatures accessors

mgFeatures-accessors: mgFeatures accessors
In metagenomeFeatures: Exploration of marker-gene sequence taxonomic annotations

Description Usage Arguments Value Examples

Description

Accessors for mgFeatures-class object slots.
mgF_seq - refDbSeq slot,
mgF_taxa - taxa slot,
mgF_tree - phylogenetic tree slot, and
mgF_meta - metadata slot.

Usage

1
2
3
4
5
6
7
mgF_tree(mgF)

mgF_seq(mgF)

mgF_taxa(mgF)

mgF_meta(mgF)

Arguments

mgF

mgFeatures-class object.

Value

appropriate class object for the slot accessed

Examples

1
2
3
4
5
data(mock_mgF)
mgF_seq(mock_mgF)
mgF_taxa(mock_mgF)
mgF_tree(mock_mgF)
mgF_meta(mock_mgF)

metagenomeFeatures documentation built on Nov. 8, 2020, 5:18 p.m.

Related to mgFeatures-accessors in metagenomeFeatures...

metagenomeFeatures index
README.md Exploring sequence and phylogenetic diversity for a taxonomic group of interest. metagenomeFeatures classes and methods. Using metagenomeFeatures to Retrieve Feature Data.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close