Files in metagenomeFeatures
Exploration of marker-gene sequence taxonomic annotations

DESCRIPTION
NAMESPACE
README.md
NEWS
build/vignette.rds
tests/testSeq.fasta.gz
tests/test_seq.rds
tests/testTaxa.sqlite3
tests/test_tree.rds
tests/testthat.R
tests/testMgAnno.rds
tests/test_taxa.sqlite3
tests/testthat/helper-MRexp.R tests/testthat/test_metagenomeAnnotation-class.R tests/testthat/test_vignette_data.R tests/testthat/test_mgDb-select.R tests/testthat/test_mgFeatures-class.R tests/testthat/helper-MgDb.R tests/testthat/test_agg_tax.R tests/testthat/test_MRexp_anno.R tests/testthat/test_mgDb-class.R tests/testthat/test_mdDb-annotateFeatures.R
inst/extdata/6692_analysis_dt-16S_r-1_c-3.biom
inst/extdata/mock_MgDb_seq.fasta.gz
inst/extdata/mock_sample_data.csv
inst/extdata/genus_keys.RData
inst/extdata/msd16s_MgDb_tree.rds
inst/extdata/mockTaxa.sqlite
inst/extdata/mockTree.rds
inst/extdata/mockTree.tree
inst/extdata/mock_counts.csv
inst/extdata/mockSeq.fasta.gz
inst/extdata/demoSeq.fasta.gz
inst/extdata/gg_rep_genus_df.csv
inst/extdata/demoTaxa.sqlite
inst/extdata/mock_MgDb_taxa.sqlite
inst/scripts/make_mock_mgF.R inst/scripts/make_mockMgDb.R inst/scripts/make_mgQuery.R inst/scripts/make_mock_query_df.R inst/scripts/make_testMgAnno.R inst/scripts/make_testMgDb.R
inst/doc/Exploring_a_MgDb.html
inst/doc/Example_16S_Annotation_Workflow.R
inst/doc/Example_16S_Annotation_Workflow.html
inst/doc/Exploring_a_MgDb.Rmd inst/doc/Exploring_a_MgDb.R inst/doc/Example_16S_Annotation_Workflow.Rmd R/mgDb_method_select.R R/mgQuery.R R/mock_mgF.R R/mockMgDb.R R/mock_query_df.R R/mgDb_method_annotateFeatures.R R/mgDb-class.R R/mgFeatures-class.R R/phylo-class.R R/vignette_data.R R/utils.R R/mgDb_method_annotateMRexp.R R/aggregate_taxa.R R/mgDb-taxa_accessors.R R/demoMgDb.R
data/msd16s_query_df.rdata
data/mgQuery.rdata
data/datalist
data/mock_mgF.RData
data/msd16s_metagenomeAnnotation.rdata
data/mock_query_df.rdata
man/aggregate_taxa.Rd man/taxa_levels.Rd man/annotateFeatures-MgDb-method.Rd man/mgQuery.Rd man/mgF_meta.Rd man/reexports.Rd man/taxa_keys.Rd man/mgF_tree.Rd man/annotateMRexp_fData-MgDb-method.Rd man/mgdb_taxa.Rd man/taxa_columns.Rd man/mgF_taxa.Rd man/mgFeatures-class.Rd man/get_demoMgDb.Rd man/mgdb_tree.Rd man/mgF_seq.Rd man/mock_mgF.Rd man/taxa_keytypes.Rd man/MgDb-class.Rd man/show-MgDb-method.Rd man/select-MgDb-method.Rd man/mgdb_seq.Rd man/get_mockMgDb.Rd man/mgdb_meta.Rd man/mock_query_df.Rd vignettes/Example_16S_Annotation_Workflow.Rmd vignettes/Exploring_a_MgDb.Rmd
metagenomeFeatures documentation built on Nov. 17, 2017, 1:07 p.m.