Files in metagenomeFeatures
Exploration of marker-gene sequence taxonomic annotations

NEWS
DESCRIPTION
README.md
NAMESPACE
inst/manuscript/manuscript_supplemental.Rmd
inst/manuscript/manuscript_supplemental.bib
inst/scripts/make_mock_query_df.R inst/scripts/make_greengenes13.8_85.R inst/scripts/make_mock_mgF.R inst/scripts/make_qiita_study_94_gg_ids.R inst/scripts/make_testMgDb.R inst/scripts/make_greengenes13.8_97.R
inst/doc/Exploring_a_MgDb.html
inst/doc/database-explore.html
inst/doc/retrieve-feature-data.html
inst/doc/database-explore.Rmd inst/doc/database-explore.R inst/doc/Exploring_a_MgDb.R inst/doc/retrieve-feature-data.R inst/doc/Exploring_a_MgDb.Rmd inst/doc/retrieve-feature-data.Rmd
inst/extdata/229_otu_table.biom
inst/extdata/gg13.8_85_metadata.RData
inst/extdata/gg13.8_85.tre
inst/extdata/mock_counts.csv
inst/extdata/mock_sample_data.csv
inst/extdata/qiita_study_94_gg_ids.RDS
inst/extdata/genus_keys.RData
inst/extdata/6692_analysis_dt-16S_r-1_c-3.biom
inst/extdata/gg13.8_85.sqlite
vignettes/database-explore.Rmd vignettes/Exploring_a_MgDb.Rmd vignettes/retrieve-feature-data.Rmd R/gg13.8_85MgDb.R R/phylo-class.R R/mock_query_df.R R/mgDb_method_annotateFeatures.R R/utils.R R/mgFeatures-class.R R/DNAStringSetOrNull-class.R R/mgDb-class.R R/mock_mgF.R R/mgDb_method_select.R R/mgDb-taxa_accessors.R man/mock_mgF.Rd man/make_mgdb_sqlite.Rd man/taxa_.Rd man/MgDb-class.Rd man/mgFeatures-class.Rd man/show-MgDb-method.Rd man/newMgDb.Rd man/get_gg13.8_85MgDb.Rd man/mgDb_.Rd man/reexports.Rd man/annotateFeatures-MgDb-method.Rd man/mock_query_df.Rd man/mgFeatures.Rd man/select-MgDb-method.Rd man/mgF_.Rd
build/vignette.rds
tests/test_db.sqlite3
tests/test_taxa.sqlite3
tests/testthat.R
tests/test_tree.rds
tests/test_seq.rds
tests/testthat/test_mdDb-annotateFeatures.R tests/testthat/test_mgFeatures-class.R tests/testthat/test_mgDb-class.R tests/testthat/test_mgDb-select.R tests/testthat/test_agg_tax.R tests/testthat/helper-MgDb.R
data/datalist
data/mock_query_df.rdata
data/mock_mgF.RData
metagenomeFeatures documentation built on May 2, 2018, 4:13 a.m.