API for metaseqR
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
| Global functions | |
|---|---|
| .onAttach | Source code |
| as.class.vector | Man page Source code |
| biasPlotToJSON | Source code |
| bioDetectionToJSON | Source code |
| bioSaturationToJSON | Source code |
| boxplotToJSON | Source code |
| build.export | Man page Source code |
| calc.f1score | Man page Source code |
| calc.otr | Man page Source code |
| cddat | Man page |
| cdplot | Man page |
| check.contrast.format | Man page Source code |
| check.file.args | Man page Source code |
| check.graphics.file | Man page Source code |
| check.graphics.type | Man page Source code |
| check.libsize | Man page Source code |
| check.main.args | Man page Source code |
| check.num.args | Man page Source code |
| check.packages | Man page Source code |
| check.parallel | Man page Source code |
| check.text.args | Man page Source code |
| combine.bonferroni | Man page Source code |
| combine.maxp | Man page Source code |
| combine.minp | Man page Source code |
| combine.simes | Man page Source code |
| combine.weight | Man page Source code |
| construct.gene.model | Man page Source code |
| construct.utr.model | Man page Source code |
| correct.transcripts | Source code |
| countsBioToJSON | Source code |
| deprecated.warning | Source code |
| diagplot.avg.ftd | Man page Source code |
| diagplot.boxplot | Man page Source code |
| diagplot.cor | Man page Source code |
| diagplot.de.heatmap | Man page Source code |
| diagplot.edaseq | Man page Source code |
| diagplot.filtered | Man page Source code |
| diagplot.ftd | Man page Source code |
| diagplot.mds | Man page Source code |
| diagplot.metaseqr | Man page Source code |
| diagplot.noiseq | Man page Source code |
| diagplot.noiseq.saturation | Man page Source code |
| diagplot.pairs | Man page Source code |
| diagplot.roc | Man page Source code |
| diagplot.venn | Man page Source code |
| diagplot.volcano | Man page Source code |
| disp | Man page Source code |
| downsample.counts | Man page Source code |
| elap2human | Source code |
| estimate.aufc.weights | Man page Source code |
| estimate.sim.params | Man page Source code |
| filter.exons | Man page Source code |
| filter.genes | Man page Source code |
| filter.high | Man page Source code |
| filter.low | Man page Source code |
| filteredToJSON | Source code |
| fisher.method | Man page Source code |
| fisher.method.perm | Man page Source code |
| fisher.sum | Man page Source code |
| get.alt.host | Source code |
| get.annotation | Man page Source code |
| get.arg | Man page Source code |
| get.biotypes | Man page Source code |
| get.bs.organism | Man page Source code |
| get.dataset | Man page Source code |
| get.defaults | Man page Source code |
| get.ensembl.annotation | Man page Source code |
| get.exon.attributes | Man page Source code |
| get.gc.content | Man page Source code |
| get.gene.attributes | Man page Source code |
| get.host | Man page Source code |
| get.preset.opts | Man page Source code |
| get.strict.biofilter | Man page Source code |
| get.transcript.attributes | Source code |
| get.transcript.utr.attributes | Man page Source code |
| get.ucsc.annotation | Man page Source code |
| get.ucsc.credentials | Man page Source code |
| get.ucsc.dbl | Man page Source code |
| get.ucsc.organism | Man page Source code |
| get.ucsc.query | Man page Source code |
| get.ucsc.tabledef | Man page Source code |
| get.ucsc.tbl.tpl | Man page Source code |
| get.valid.chrs | Man page Source code |
| get.weights | Man page Source code |
| getColorScheme | Source code |
| getColors | Source code |
| getGroupColorScheme | Source code |
| graphics.close | Man page Source code |
| graphics.open | Man page Source code |
| hg19.exon.counts | Man page |
| libsize.list.hg19 | Man page |
| libsize.list.mm9 | Man page |
| load.bs.genome | Man page Source code |
| log2disp | Man page Source code |
| make.avg.expression | Man page Source code |
| make.contrast.list | Man page Source code |
| make.export.list | Man page Source code |
| make.fold.change | Man page Source code |
| make.grid | Man page Source code |
| make.highcharts.points | Man page Source code |
| make.html.body | Man page Source code |
| make.html.cells | Man page Source code |
| make.html.header | Man page Source code |
| make.html.rows | Man page Source code |
| make.html.table | Man page Source code |
| make.matrix | Man page Source code |
| make.path.struct | Man page Source code |
| make.permutation | Man page Source code |
| make.project.path | Man page Source code |
| make.report.messages | Man page Source code |
| make.sample.list | Man page Source code |
| make.sim.data.sd | Man page Source code |
| make.sim.data.tcc | Man page Source code |
| make.stat | Man page Source code |
| make.transformation | Man page Source code |
| make.venn.areas | Man page Source code |
| make.venn.colorscheme | Man page Source code |
| make.venn.counts | Man page Source code |
| make.venn.pairs | Man page Source code |
| mdsToJSON | Source code |
| meta.perm | Man page Source code |
| meta.test | Man page Source code |
| meta.worker | Man page Source code |
| metaseqR | Man page |
| metaseqR-package | Man page |
| metaseqR.version | Source code |
| metaseqr | Man page Source code |
| metaseqr.main | Man page |
| mlfo | Man page Source code |
| mm9.gene.counts | Man page |
| nat2log | Man page Source code |
| normalize.deseq | Man page Source code |
| normalize.edaseq | Man page Source code |
| normalize.edger | Man page Source code |
| normalize.nbpseq | Man page Source code |
| normalize.noiseq | Man page Source code |
| read.targets | Man page Source code |
| read2count | Man page Source code |
| readNoiseToJSON | Source code |
| reduce.exons | Man page Source code |
| reduce.gene.data | Man page Source code |
| reduce.transcripts.utr | Source code |
| reduce.transcripts.utr.transcript | Source code |
| sample.list.hg19 | Man page |
| sample.list.mm9 | Man page |
| set.arg | Man page Source code |
| stat.bayseq | Man page Source code |
| stat.deseq | Man page Source code |
| stat.edger | Man page Source code |
| stat.limma | Man page Source code |
| stat.nbpseq | Man page Source code |
| stat.noiseq | Man page Source code |
| stopwrap | Source code |
| unquote_js_fun | Source code |
| validate.alg.args | Man page Source code |
| validate.list.args | Man page Source code |
| volcanoToJSON | Source code |
| wapply | Man page Source code |
| warnwrap | Source code |
| wp.adjust | Man page Source code |
