methVisual: Methods for visualization and statistics on DNA methylation data

The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.

AuthorA. Zackay, C. Steinhoff
Date of publicationNone
MaintainerArie Zackay <arie.zackay@mail.huji.ac.il>
LicenseGPL (>= 2)
Version1.26.0

View on Bioconductor

Files

methVisual/DESCRIPTION
methVisual/NAMESPACE
methVisual/R
methVisual/R/MethAlignNW.R methVisual/R/MethDataInput.R methVisual/R/MethVisual.R methVisual/R/MethylQC.R
methVisual/build
methVisual/build/vignette.rds
methVisual/data
methVisual/data/methData.RData
methVisual/inst
methVisual/inst/doc
methVisual/inst/doc/methVisual.R
methVisual/inst/doc/methVisual.Rnw
methVisual/inst/doc/methVisual.pdf
methVisual/inst/examples
methVisual/inst/examples/BiqAnalyzer
methVisual/inst/examples/BiqAnalyzer/Demo_data
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_A.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_B.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_C.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_D.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_E.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_F.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_G.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_H.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_I.fasta
methVisual/inst/examples/BiqAnalyzer/Demo_data/seq_J.fasta
methVisual/inst/examples/BiqAnalyzer/Master_Sequence.txt
methVisual/inst/examples/BiqAnalyzer/multiFASTA.fasta
methVisual/inst/examples/GFF
methVisual/inst/examples/GFF/1.gff
methVisual/inst/examples/GFF/2.gff
methVisual/inst/examples/GFF/3.gff
methVisual/inst/examples/GFF/4.gff
methVisual/inst/examples/GFF/5.gff
methVisual/man
methVisual/man/Cooccurrence.Rd methVisual/man/MethAlignNW.Rd methVisual/man/MethDataInput.Rd methVisual/man/MethLollipops.Rd methVisual/man/MethylQC.Rd methVisual/man/cgInAlign.Rd methVisual/man/cgMethFinder.Rd methVisual/man/coversionGenom.Rd methVisual/man/findNonAligned.Rd methVisual/man/heatMapMeth.Rd methVisual/man/makeDataMethGFF.Rd methVisual/man/makeLocalExpDir.Rd methVisual/man/makeTabFilePath.Rd methVisual/man/matrixSNP.Rd methVisual/man/methCA.Rd methVisual/man/methData.Rd methVisual/man/methFisherTest.Rd methVisual/man/methWhitneyUTest.Rd methVisual/man/plotAbsMethyl.Rd methVisual/man/plotMatrixSNP.Rd methVisual/man/readBisulfFASTA.Rd methVisual/man/selectRefSeq.Rd
methVisual/vignettes
methVisual/vignettes/methVisual.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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