readBisulfFASTA: Read multiple FASTA file

In methVisual: Methods for visualization and statistics on DNA methylation data

Description

Read multiple FASTA file and write bisulfite sequences in separate FASTA files for every bisulfite sequence

Usage

readBisulfFASTA(sFileName,sDirName)

Arguments

sFileName	String; path to multiple FASTA file
sDirName	String; path to directory of created separated FASTA files

Author(s)

Arie Zackay <[e-mail]>, Christine Steinhoff <[e-mail]>

Examples

## In order to use the following example 
## make sure that you have writing permission under R.home()
## directory. If you do not have permission choose your own path. 
#dir.create(file.path(R.home(component="home"),"/BiqAnalyzer")) 
BiqAnalyzer_path <- file.path(tempdir(), "BiqAnalyzer")
dir.create(BiqAnalyzer_path)
makeLocalExpDir(dataPath="/examples/BiqAnalyzer", localDir=BiqAnalyzer_path)

readBisulfFASTA(sFileName=file.path(BiqAnalyzer_path,"multiFASTA.fasta"),
                sDirName=BiqAnalyzer_path)

methVisual documentation built on April 28, 2020, 7:08 p.m.