cgInAlign: Amount of CpGs

Description Usage Arguments Details Value Author(s) Examples

View source: R/MethVisual.R

Description

Calculating amount of CpGs between alignments border

Usage

1

Arguments

methData

An object of type list that contains information on the pairwise alignments and methylation status of all CpG motifs under study. Created by applying MethAlignNW()

Details

This function computes the amount of CpGs on the positions corresponds to genomic sequence over all sequences under study between the alignment borders.

Value

Integer vector of CpG amount

Author(s)

Arie Zackay <[email protected]>, Christine Steinhoff <[email protected]>

Examples

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methVisual documentation built on May 2, 2018, 2:49 a.m.