selectRefSeq: Uploading genomic sequence

Description Usage Arguments Details Value Author(s) Examples

View source: R/MethDataInput.R

Description

Uploading genomic sequence

Usage

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selectRefSeq(sFileName)

Arguments

sFileName

path and name of genomic sequence to be uploaded

Details

Uploading genomic sequence

Value

This function is used in order to read the reference sequence into the R environment. The reference sequences must be in fasta format. The user must give the path and name of the reference sequence in a character string.

Author(s)

Arie Zackay <[email protected]>, Christine Steinhoff <[email protected]>

Examples

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## make sure that you have reading 
## permission under R.home() directory. If you do not have permission
## choose your own path.
#dir.create(file.path(R.home(component="home"),"/BiqAnalyzer")) 
BiqAnalyzer_path <- file.path(tempdir(), "BiqAnalyzer")
dir.create(BiqAnalyzer_path) 
makeLocalExpDir(dataPath="/examples/BiqAnalyzer", localDir=BiqAnalyzer_path)
refseq <- selectRefSeq(file.path(BiqAnalyzer_path, "Master_Sequence.txt"))

methVisual documentation built on May 2, 2018, 2:49 a.m.