selectRefSeq: Uploading genomic sequence
In methVisual: Methods for visualization and statistics on DNA methylation data

Description Usage Arguments Details Value Author(s) Examples

Uploading genomic sequence

1	selectRefSeq(sFileName)

sFileName

path and name of genomic sequence to be uploaded

Uploading genomic sequence

This function is used in order to read the reference sequence into the R environment. The reference sequences must be in fasta format. The user must give the path and name of the reference sequence in a character string.

Arie Zackay <arie.zackay@mail.huji.ac.il>, Christine Steinhoff <steinhof@molgen.mpg.de>

## make sure that you have reading 
## permission under R.home() directory. If you do not have permission
## choose your own path.
#dir.create(file.path(R.home(component="home"),"/BiqAnalyzer")) 
BiqAnalyzer_path <- file.path(tempdir(), "BiqAnalyzer")
dir.create(BiqAnalyzer_path) 
makeLocalExpDir(dataPath="/examples/BiqAnalyzer", localDir=BiqAnalyzer_path)
refseq <- selectRefSeq(file.path(BiqAnalyzer_path, "Master_Sequence.txt"))