Description Usage Format Details Value See Also Examples
The object is a list
with 2 entries: "OBSERVATION" and
"PERMUTATION".
1 
a list
of class methylInheritanceAllResults
containing the following elements:
OBSERVATION
a list
containing:
SITES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated sites between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry, the number
of conserved hypo differentially methylated sites between the three
consecutive generations.
TILES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated positions between two consecutive
generations. The first element represents the intersection of the
first and second generations; the second element, the intersection of
the second and third generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated positions between two consecutive
generations.The first element represents the intersection of the first and
second generations; the second element, the intersection of the second
and third generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated positions between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry,
the number of conserved
hypo differentially methylated positions between the three consecutive
generations.
PERMUTATION
a list
containing nbrPermutations
entries. Each entry is
a list
containing:
SITES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated sites between two consecutive generations.The
first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated sites between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry,
the number of conserved
hypo differentially methylated sites between the three consecutive
generations.
TILES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated positions between two consecutive
generations. The first element represents the intersection of the
first and second generations; the second element, the intersection of
the second and third generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated positions between two consecutive
generations.The first element represents the intersection of the first and
second generations; the second element, the intersection of the second
and third generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated positions between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry,
the number of conserved
hypo differentially methylated positions between the three consecutive
generations.
This dataset can be
used to test the extractInfo
function.The extracted information can
be used to calculate the significant level or to create a graph.
a list
of class methylInheritanceAllResults
containing the following elements:
OBSERVATION
a list
containing:
SITES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated sites between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry, the number
of conserved hypo differentially methylated sites between the three
consecutive generations.
TILES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated positions between two consecutive
generations. The first element represents the intersection of the
first and second generations; the second element, the intersection of
the second and third generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated positions between two consecutive
generations.The first element represents the intersection of the first and
second generations; the second element, the intersection of the second
and third generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated positions between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry,
the number of conserved
hypo differentially methylated positions between the three consecutive
generations.
PERMUTATION
a list
containing a number of entries corresponding to the number of permutations
that have been produced. Each entry is
a list
containing:
SITES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated sites between two consecutive generations.The
first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated sites between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry,
the number of conserved
hypo differentially methylated sites between the three consecutive
generations.
TILES
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
with 2 entries,
the number of conserved
hyper differentially methylated positions between two consecutive
generations. The first element represents the intersection of the
first and second generations; the second element, the intersection of
the second and third generations.
HYPO
a list
of integer
with 2 entries,
the number of conserved
hypo differentially methylated positions between two consecutive
generations.The first element represents the intersection of the first and
second generations; the second element, the intersection of the second
and third generations.
iAll
a list
containing:
HYPER
a list
of integer
with 1 entry,
the number of conserved
hyper differentially methylated positions between the three consecutive
generations.
HYPO
a list
of integer
with 1 entry,
the number of conserved
hypo differentially methylated positions between the three consecutive
generations.
extractInfo
for extracting the
information specific to a subsection of the permutation analysis
1 2 3 4 5 6 7 8  ## Loading dataset containing all results
data(methylInheritanceResults)
## Extract information for the intersection between conserved differentially
## methylated sites (type = sites) between the intersection of 2
## generations (inter = i2): F1 and F2 (position = 1)
extractInfo(allResults = methylInheritanceResults,
type = "sites", inter="i2", 1)

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