validateMergePermutationAndObservation: Validation of some parameters of the...

In methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Description

Validation of some parameters needed by the public mergePermutationAndObservation function.

Usage

validateMergePermutationAndObservation(permutationResults,
  observationResults)

Arguments

permutationResults	a list with 1 entry called PERMUTATION. The PERMUTATION entry is a list with a number of entries corresponding to the number of permutations that have been processed. Each entry contains the result of one permutation.
observationResults	a list with 1 entry called OBSERVATION. The OBSERVATION entry is a list containing the result obtained with the observed dataset (not shuffled).

Value

0 indicating that all parameters validations have been successful.

Author(s)

Astrid Deschenes

Examples

## Create a observation result
observed <- list()
observed[["OBSERVATION"]] <- list()
observed[["OBSERVATION"]][["SITES"]] <- list()
observed[["OBSERVATION"]][["SITES"]][["i2"]] <- list(HYPER = list(11, 10),
    HYPO = list(13, 12))
observed[["OBSERVATION"]][["SITES"]][["iAll"]] <- list(HYPER = list(1),
    HYPO = list(3))

## Create a permutation result containing only 1 permutation result
## Real perumtations results would have more entries
permutated <- list()
permutated[["PERMUTATION"]] <- list()
permutated[["PERMUTATION"]][[1]] <- list()
permutated[["PERMUTATION"]][[1]][["SITES"]] <- list()
permutated[["PERMUTATION"]][[1]][["SITES"]][["i2"]] <- list(HYPER =
    list(11, 12), HYPO = list(8, 11))
permutated[["PERMUTATION"]][[1]][["SITES"]][["iAll"]] <- list(HYPER =
    list(0), HYPO = list(1))

## Merge permutation and observation results
methylInheritance:::validateMergePermutationAndObservation(
    permutationResults = permutated, observationResults = observed)

## The function raises an error when at least one paramater is not valid
## Not run: methylInheritance:::validateMergePermutationAndObservation(
    permutationResults = permutated, observationResults = NULL)
## End(Not run)

methylInheritance documentation built on Nov. 8, 2020, 8:21 p.m.