samplesForTransgenerationalAnalysis: All samples information, formated by 'methylKit', in a...

In methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Description

The object is a list with 3 entries. Each entry corresponds to the information for one generation (first entry = first generation, etc..) stored in a methylRawList. There are 12 samples (6 controls and 6 cases) for each generation. Each sample information is stored in a methylRaw object.

Usage

data(samplesForTransgenerationalAnalysis)

Format

A list containing three methylRawList objects. Each methylRawList contains the information for one generation (first entry = first generation, etc..). Each sample information is stored in a methylRaw object. There is methylRaw objects (6 controls and 6 cases) in each generation.

Details

This dataset can be used to test the runPermutation function.

Value

A list containing three methylRawList objects. Each methylRawList contains the information for one generation (first entry = first generation, etc..). Each sample information is stored in a methylRaw object. There is methylRaw objects (6 controls and 6 cases) in each generation.

See Also

• runPermutation for running a permutation analysis, and optionally an observation analysis, using multi-generational dataset

Examples

## Loading dataset
data(samplesForTransgenerationalAnalysis)

## Run a permutation analysis
runPermutation(methylKitData = samplesForTransgenerationalAnalysis,
    type = "tiles", nbrPermutations = 2, vSeed = 2332)

methylInheritance documentation built on Nov. 8, 2020, 8:21 p.m.