createOutputDir: Create directories that will contained the results of the...

In methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

Description

Create directories that will contained the results of the permutations in RDS format.

Usage

createOutputDir(outputDir, doingSites = TRUE, doingTiles = FALSE,
  saveInfoByGeneration)

Arguments

outputDir	a string of character, the name of the main directory to be created.
doingSites	a logical, a directory consecrated to contain the results of the permutation analysis for sites is created when doingSites = TRUE. Default: TRUE.
doingTiles	a logical, a directory consecrated to contain the results of the permutation analysis for tiles is created when doingTiles = TRUE. Default: FALSE.
saveInfoByGeneration	a logical, when TRUE, the information about differentially methylated sites and tiles for each generation is saved in a RDS file. The information is saved in a different file for each permutation.

Value

0 when all directories are created without problem.

Author(s)

Astrid Deschenes

Examples

## Create an output directory for SITES only
methylInheritance:::createOutputDir(outputDir = "testSites",
    doingSites = TRUE, doingTiles = FALSE, saveInfoByGeneration = TRUE)

methylInheritance documentation built on Nov. 8, 2020, 8:21 p.m.