Files in methylInheritance

Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/methylInheritanceResults.RData

data/samplesForTransgenerationalAnalysis.RData

data/demoForTransgenerationalAnalysis.RData

R/methylInheritance.R R/methylInheritanceInternalMethods.R R/methylInheritanceMethods.R R/print.methylInheritanceAllResults.R vignettes/methylInheritance.Rmd

vignettes/biblio.bibtex

vignettes/demo_02/SITES/SITES_permutation_1.RDS

vignettes/demo_02/SITES/SITES_permutation_2.RDS

vignettes/demo_01/SITES/SITES_observed_results.RDS

vignettes/demo/F2_control_01.txt

vignettes/demo/F1_control_01.txt

vignettes/demo/F1_case_01.txt

vignettes/demo/F2_case_01.txt

vignettes/test_restart/TILES/TILES_permutation_2.RDS

vignettes/test_restart/TILES/TILES_permutation_1.RDS

vignettes/test_restart/TILES/TILES_observed_results.RDS

man/isInterGenerationResults.Rd man/validateMergePermutationAndObservation.Rd man/demoForTransgenerationalAnalysis.Rd man/validateLoadConvergenceData.Rd man/mergePermutationAndObservation.Rd man/runPermutation.Rd man/loadConvergenceData.Rd man/plotGraph.Rd man/validateRunPermutation.Rd man/interGeneration.Rd man/methylInheritanceResults.Rd man/validateExtractInfo.Rd man/validateRunObservation.Rd man/runOnePermutationOnAllGenerations.Rd man/loadAllRDSResults.Rd man/samplesForTransgenerationalAnalysis.Rd man/formatInputMethylData.Rd man/saveInterGenerationResults.Rd man/calculateSignificantLevel.Rd man/plotConvergenceGraph.Rd man/getGRangesFromMethylDiff.Rd man/createOutputDir.Rd man/methylInheritanceAllResults.Rd man/readInterGenerationResults.Rd man/createDataStructure.Rd man/extractInfo.Rd man/methylInheritance-package.Rd man/runObservation.Rd tests/runTests.R

inst/NEWS

inst/CITATION

inst/doc/methylInheritance.R inst/doc/methylInheritance.Rmd

inst/doc/methylInheritance.html

inst/extdata/resultsForTransgenerationalAnalysis.RDS

inst/extdata/permutationResultsForSites.RDS

inst/extdata/methylObj_001.RDS

inst/extdata/TEST/SITES/SITES_permutation_1.RDS

inst/extdata/TEST/SITES/SITES_permutation_2.RDS

inst/extdata/TEST/SITES/SITES_observed_results.RDS

inst/extdata/TEST/SITES/SITES_permutation_3.RDS

inst/extdata/TEST/TILES/TILES_permutation_3.RDS

inst/extdata/TEST/TILES/TILES_permutation_2.RDS

inst/extdata/TEST/TILES/TILES_permutation_1.RDS

inst/extdata/TEST/TILES/TILES_observed_results.RDS

inst/unitTests/test_methylInheritanceMethods.R inst/unitTests/test_methylInheritanceInternalMethods.R inst/unitTests/test_validateRunPermutationUsingRDS.R inst/unitTests/test_print_methylInheritanceAllResults.R

methylInheritance documentation built on Nov. 8, 2020, 8:21 p.m.