getDBPath-methods: Get path to database of the methylDB objects

In methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

Description

The function returns the path to the flat file database that stores the data of the methylRawDB, methylRawListDB, methylBaseDB or methylDiffDB objects.

Usage

getDBPath(x)

## S4 method for signature 'methylRawListDB'
getDBPath(x)

## S4 method for signature 'methylBaseDB'
getDBPath(x)

## S4 method for signature 'methylRawDB'
getDBPath(x)

## S4 method for signature 'methylDiffDB'
getDBPath(x)

Arguments

x	an methylBaseDB,methylRawDB, methylRawListDB or methylDiffDB object

Examples

data(methylKit)

methylBaseDB.obj <- unite(methylRawList.obj,save.db=TRUE,dbdir="methylDB")


#The path to the database is returned
getDBPath(methylBaseDB.obj)


# remove Database again
rm(methylBaseDB.obj)
unlink("methylDB",recursive=TRUE)

methylKit documentation built on Jan. 30, 2021, 2 a.m.