getTreatment-methods: Get or Set treatment vector of methylKit object

In methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

Description

The function returns or replaces the treatment vector stored in any of the following methylKit objects: methylBase,methylRawList,methylBaseDB, methylRawListDB,methylDiff,methylDiffDB.

Usage

getTreatment(x)
getTreatment(x) <- value

getTreatment(x) <- value

## S4 method for signature 'methylRawList'
getTreatment(x)

## S4 replacement method for signature 'methylRawList'
getTreatment(x) <- value

## S4 method for signature 'methylBase'
getTreatment(x)

## S4 replacement method for signature 'methylBase'
getTreatment(x) <- value

## S4 method for signature 'methylDiff'
getTreatment(x)

## S4 replacement method for signature 'methylDiff'
getTreatment(x) <- value

## S4 method for signature 'methylRawListDB'
getTreatment(x)

## S4 replacement method for signature 'methylRawListDB'
getTreatment(x) <- value

## S4 method for signature 'methylBaseDB'
getTreatment(x)

## S4 replacement method for signature 'methylBaseDB'
getTreatment(x) <- value

## S4 method for signature 'methylDiffDB'
getTreatment(x)

## S4 replacement method for signature 'methylDiffDB'
getTreatment(x) <- value

Arguments

x	a methylKit object
value	a valid replacement for the treatment vector of the object

Examples

data(methylKit)

# The treatment vector can be printed ..
getTreatment(methylBase.obj)
 
# .. or replaced with a new one  
newObj <- methylBase.obj
getTreatment(newObj) <- c(1,2,3,4)
getTreatment(newObj)

methylKit documentation built on Jan. 30, 2021, 2 a.m.