getData-methods: get the data slot from the methylKit objects

Description Usage Arguments Value Examples

Description

The functions retrieves the table containing methylation information from methylKit Objects. The data retrived from this function is of a data.frame. This is basically containing all relevant methylation information per genomic region or base.

Usage

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getData(x)

## S4 method for signature 'methylBase'
getData(x)

## S4 method for signature 'methylRaw'
getData(x)

## S4 method for signature 'methylDiff'
getData(x)

## S4 method for signature 'methylRawDB'
getData(x)

## S4 method for signature 'methylBaseDB'
getData(x)

## S4 method for signature 'methylDiffDB'
getData(x)

Arguments

x

an methylBase,methylBaseDB, methylRaw,methylRawDB or methylDiff object

Value

data frame for methylation events

Examples

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data(methylKit)

# following commands show first lines of returned 
# data.frames from getData() function
head(
getData(methylBase.obj)
)

head( getData(methylDiff.obj))

head(getData(methylRawList.obj[[1]]))

methylKit documentation built on Jan. 30, 2021, 2 a.m.