methylKit-defunct: Deprecated/Defunct functions

In methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

Description

These are deprecated or defunct functions. Most of them are replaced by genomation functions. See the vignette for examples on how to use genomation functions for annotation purposes.

Usage

annotate.WithFeature()

annotate.WithFeature.Flank()

annotate.WithGenicParts()

read.bed()

read.feature.flank()

read.transcript.features()

getFeatsWithTargetsStats()

getFlanks()

getMembers()

getTargetAnnotationStats()

plotTargetAnnotation()

read()

read.bismark()

adjust.methylC()

get.methylDiff()

methylKit documentation built on Jan. 30, 2021, 2 a.m.