makeMethylDB-methods: coerce methylKit objects from memory to flat file database...

In methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

Description

The function converts in-memory methylKit objects to methylDB objects

Usage

makeMethylDB(obj, dbdir = getwd())

## S4 method for signature 'methylBase'
makeMethylDB(obj, dbdir = getwd())

## S4 method for signature 'methylRaw'
makeMethylDB(obj, dbdir = getwd())

## S4 method for signature 'methylDiff'
makeMethylDB(obj, dbdir = getwd())

## S4 method for signature 'methylRawList'
makeMethylDB(obj, dbdir = getwd())

Arguments

obj	an methylBase, methylRaw, methylRawList or an methylDiff object
dbdir	directory where flat file database(s) should be stored, defaults to getwd(), working directory.

Value

an methylBaseDB,methylRawDB, methylRawListDB or an methylDiffDB object

Examples

## Not run: 
data(methylKit)


makeMethylDB(methylBase.obj,"my/path")

## End(Not run)

methylKit documentation built on Jan. 30, 2021, 2 a.m.