remove_taxa: Exclude Taxa
In microbiome: Microbiome Analytics
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Filter out selected taxa from a phyloseq object.
Usage
1
remove_taxa(taxa = NULL, x)
Arguments
taxa
Names of taxa to be removed.
x
phyloseq-class object
Details
This complements the phyloseq function prune_taxa by providing
a way to exclude given groups from a phyloseq object.
Value
Filtered phyloseq object.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
To cite the microbiome R package, see citation('microbiome')
See Also
phyloseq::prune_taxa, phyloseq::subset_taxa
Examples
1
2
data(dietswap)
pseq <- remove_taxa(c("Akkermansia", "Dialister"), dietswap)
microbiome documentation built on Nov. 8, 2020, 5:08 p.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Filter out selected taxa from a phyloseq object.
Usage
1 | remove_taxa(taxa = NULL, x)
|
Arguments
taxa |
Names of taxa to be removed. |
x |
|
Details
This complements the phyloseq function prune_taxa by providing a way to exclude given groups from a phyloseq object.
Value
Filtered phyloseq object.
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
To cite the microbiome R package, see citation('microbiome')
See Also
phyloseq::prune_taxa, phyloseq::subset_taxa
Examples
1 2 | data(dietswap)
pseq <- remove_taxa(c("Akkermansia", "Dialister"), dietswap)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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