annotate_transcript_strand: Add transcript strand annotation to SBS variants (defined in...
In musicatk: Mutational Signature Comprehensive Analysis Toolkit
Description
Usage
Arguments
Value
Examples
View source: R/annotate_variants.R
Description
Add transcript strand annotation to SBS variants (defined in genes only)
Usage
1
annotate_transcript_strand(musica, genome_build, build_table = TRUE)
Arguments
musica
A musica object.
genome_build
Which genome build to use: hg19, hg38, or a custom TxDb
object
build_table
Automatically build a table from this annotation
Value
None
Examples
1
2
musicatk documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Value Examples
View source: R/annotate_variants.R
Description
Add transcript strand annotation to SBS variants (defined in genes only)
Usage
1 | annotate_transcript_strand(musica, genome_build, build_table = TRUE)
|
Arguments
musica |
A |
genome_build |
Which genome build to use: hg19, hg38, or a custom TxDb object |
build_table |
Automatically build a table from this annotation |
Value
None
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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