compare_cosmic_v2: Compare a result object to COSMIC V2 SBS Signatures...
In musicatk: Mutational Signature Comprehensive Analysis Toolkit
Description
Usage
Arguments
Value
Examples
View source: R/compare_results.R
Description
Compare a result object to COSMIC V2 SBS Signatures (combination whole-exome
and whole-genome)
Usage
1
2
3
4
5
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compare_cosmic_v2(
result,
threshold = 0.9,
metric = "cosine",
result_name = deparse(substitute(result))
)
Arguments
result
A musica_result object.
threshold
threshold for similarity
metric
One of "cosine" for cosine similarity or "jsd"
for 1 minus the Jensen-Shannon Divergence. Default "cosine".
result_name
title for plot user result signatures
Value
Returns the comparisons
Examples
1
2
data(res)
compare_cosmic_v2(res, threshold = 0.7)
musicatk documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Value Examples
View source: R/compare_results.R
Description
Compare a result object to COSMIC V2 SBS Signatures (combination whole-exome and whole-genome)
Usage
1 2 3 4 5 6 | compare_cosmic_v2(
result,
threshold = 0.9,
metric = "cosine",
result_name = deparse(substitute(result))
)
|
Arguments
result |
A |
threshold |
threshold for similarity |
metric |
One of |
result_name |
title for plot user result signatures |
Value
Returns the comparisons
Examples
1 2 | data(res)
compare_cosmic_v2(res, threshold = 0.7)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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