Description Usage Arguments Value Examples
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1 | extract_variants_from_maf(maf, extra_fields = NULL)
|
maf |
MAF object loaded by read.maf() from the 'maftools' package |
extra_fields |
Optionally extract additional columns from the
maf object. Default |
Returns a data.table of variants from a maf which can be used to
create a musica
object.
1 2 3 4 5 | maf_file <- system.file("extdata", "public_TCGA.LUSC.maf",
package = "musicatk")
library(maftools)
maf <- read.maf(maf_file)
variants <- extract_variants_from_maf(maf = maf)
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