create_sbs192_table: Uses a genome object to find context and generate standard...

In musicatk: Mutational Signature Comprehensive Analysis Toolkit

Description

Uses a genome object to find context and generate standard SBS192 table using transcript strand

Usage

create_sbs192_table(musica, g, strand_type, overwrite = FALSE)

Arguments

musica	Input samples
g	A BSgenome object indicating which genome reference the variants and their coordinates were derived from.
strand_type	Transcript_Strand or Replication_Strand
overwrite	Overwrite existing count table

Value

Returns the created SBS192 count table object built using either transcript strand or replication strand

musicatk documentation built on Nov. 8, 2020, 5:16 p.m.