extract_variants_from_maf_file: Extracts variants from a maf file
In musicatk: Mutational Signature Comprehensive Analysis Toolkit

Add Description - Aaron

1	extract_variants_from_maf_file(maf_file, extra_fields = NULL)

`maf_file`	Location of maf file
`extra_fields`	Optionally extract additional columns from the object. Default `NULL`.

Returns a data.table of variants from a maf

1
2
3

maf_file <- system.file("extdata", "public_TCGA.LUSC.maf",
package = "musicatk")
maf <- extract_variants_from_maf_file(maf_file = maf_file)

musicatk documentation built on Nov. 8, 2020, 5:16 p.m.

musicatk index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description