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inst/unitTests/test_rnaCentralAccess.R
In ncRNAtools: An R toolkit for non-coding RNA
library(RUnit)
library(GenomicRanges)
library(IRanges)
library(S4Vectors)
## Test rnaCentralTextSearch
checkTrue(grepl("^URS", rnaCentralTextSearch("HOTAIR")[1]))
## Test rnaCentralRetrieveEntry
checkEquals("URS000075C808_9606", rnaCentralRetrieveEntry("URS000075C808_9606")$rnaCentralID)
## Test rnaCentralGenomicCoordinatesSearch
checkTrue(grepl("^URS", rnaCentralGenomicCoordinatesSearch(GenomicRanges::GRanges(seqnames=S4Vectors::Rle("chr3"), ranges=IRanges::IRanges(39788104, 39795326)), "Homo sapiens")[[1]][[1]]$rnaCentralID))
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ncRNAtools documentation built on Nov. 8, 2020, 8:14 p.m.
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library(RUnit)
library(GenomicRanges)
library(IRanges)
library(S4Vectors)
## Test rnaCentralTextSearch
checkTrue(grepl("^URS", rnaCentralTextSearch("HOTAIR")[1]))
## Test rnaCentralRetrieveEntry
checkEquals("URS000075C808_9606", rnaCentralRetrieveEntry("URS000075C808_9606")$rnaCentralID)
## Test rnaCentralGenomicCoordinatesSearch
checkTrue(grepl("^URS", rnaCentralGenomicCoordinatesSearch(GenomicRanges::GRanges(seqnames=S4Vectors::Rle("chr3"), ranges=IRanges::IRanges(39788104, 39795326)), "Homo sapiens")[[1]][[1]]$rnaCentralID))
Try the ncRNAtools package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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