Nothing
R/ndex_api_config.r
In ndexr: NDEx R client library
################################################################################
## Authors:
## Florian Auer [florian.auer@med.uni-goettingen.de]
##
## History:
## Created on 28 November 2016 by Auer
## Switched to yml file on 02 Februar 2017 by Auer
##
## Description:
## Contains API configuration for connecting to NDEx servers
##
## Note:
## This file is automatically generated from a YAML file!
################################################################################
#' NDEx server api configuration
#'
#' This nested list contains the url and methods for accessing the NDEx server via its REST full api.
#' It contains specifications for NDEx server api version 1.3 and 2.0. The default api is specified by 'defaultVersion'.
#' If possible, the version 2.0 should be used.
#' Own configurations must contain a 'version' entry!
#'
#' @return Nested list resembling the NDEx server REST API structure
#' @examples
#' names(ndex_config$Version_2.0)
#' @export
ndex_config = list(
defaultVersion="Version_2.0",
Version_2.1=list(
version="2.1",
connection=list(
description="URL of the NDEx server",
host="http://www.ndexbio.org",
api="/v2"
),
api=list(
serverStatus=list(
description="Get Server Status",
url="/admin/status",
method="GET",
params=list(
format=list(
method="parameter",
tag="format",
default="standard"
)
)
),
user=list(
authenticate=list(
description="Authenticate a User",
url="/user",
method="GET",
params=list(
valid=list(
method="parameter",
tag="valid",
default="true"
)
)
),
create=list(
description="Create a new user",
url="/user",
method="POST"
),
delete=list(
description="Deletes the authenticated user, removing any other objects in the database that depend on the user",
url="/user/#USERID#",
method="DELETE",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/user/#USERID#",
method="PUT",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
get=list(
byName=list(
description="Get User By userName",
url="/user",
method="GET",
params=list(
userName=list(
method="parameter",
tag="username"
)
)
),
byId=list(
description="Get User By UUID",
url="/user/#USERID#",
method="GET",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
)
),
password=list(
change=list(
description="Changes the authenticated user's password to the new password",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
),
mail=list(
description="Causes a new password to be generated for the given user account and then emailed to the user's emailAddress",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
),
forgot=list(
method="parameter",
tag="forgot",
default="true"
)
)
)
),
verify=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/verification",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
code=list(
method="parameter",
tag="verificationCode"
)
)
),
group=list(
get=list(
description="Get User's Permissions in Group",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
group=list(
method="parameter",
tag="groupid"
)
)
),
list=list(
description="List Groups for which a user has the specified permission types",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
permission=list(
get=list(
description="Get User's Permission for Network",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
),
list=list(
description="List User's Network Permissions",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
)
),
showcase=list(
description="Get User's Showcase Networks",
url="/user/#USERID#/showcase",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
networksummary=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/networksummary",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
)
),
group=list(
create=list(
description="Create Group",
url="/group",
method="POST"
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/group/#GROUPID#",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
get=list(
description="Get a Group",
url="/group/#GROUPID#",
method="GET",
params=list(
group=list(
method="replace",
tag="#GROUPID#"
)
)
),
user=list(
list=list(
description="Get Members of a Group",
url="/group/#GROUPID#/membership",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
network=list(
list=list(
description="Get Network Permissions of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
default="READ"
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
),
get=list(
description="Get Members of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid"
)
)
),
update=list(
description="Add or Update a Group Member",
url="/group/#GROUPID#/membership",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
),
type=list(
method="parameter",
tag="type"
)
)
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#/membership",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
)
)
)
)
),
network=list(
create=list(
description="Create a CX Network",
url="/network",
method="POST"
),
update=list(
description="Update a Network",
url="/network/#NETWORKID#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
delete=list(
description="Delete a Network",
url="/network/#NETWORKID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Complete Network in CX format",
url="/network/#NETWORKID#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
summary=list(
get=list(
description="Get Network Summary",
url="/network/#NETWORKID#/summary",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
sample=list(
set=list(
description="Get Network Summary",
url="/network/#NETWORKID#/sample",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Set Network Sample",
url="/network/#NETWORKID#/sample",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
aspect=list(
getMetaData=list(
description="Get Network CX Metadata Collection",
url="/network/#NETWORKID#/aspect",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
getMetaDataByName=list(
description="Get Network Aspect Metadata",
url="/network/#NETWORKID#/aspect/#ASPECT#/metadata",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
),
get=list(
description="Get a Network Aspect As CX",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update an Aspect of a Network",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
)
),
permission=list(
get=list(
description="Get All Permissions on a Network",
url="/network/#NETWORKID#/permission",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
type=list(
tag="type",
method="parameter"
),
permission=list(
tag="permission",
method="parameter",
optional=TRUE
),
start=list(
tag="start",
method="parameter",
optional=TRUE
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update Network Permission",
url="/network/#NETWORKID#/permission",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
),
permission=list(
tag="permission",
method="parameter"
)
)
),
delete=list(
description="Delete Network Permission",
url="/network/#NETWORKID#/permission",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
)
)
)
),
profile=list(
update=list(
description="Update Network Profile",
url="/network/#NETWORKID#/profile",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
systemproperties=list(
set=list(
description="Set Network System Properties",
url="/network/#NETWORKID#/systemproperty",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
properties=list(
set=list(
description="Set Network Properties",
url="/network/#NETWORKID#/properties",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
provenance=list(
set=list(
description="Set Network Provenance",
url="/network/#NETWORKID#/provenance",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Network Provenance",
url="/network/#NETWORKID#/provenance",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
)
),
search=list(
user=list(
description="Search users",
url="/search/user",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
group=list(
description="Search groups",
url="/search/group",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
network=list(
search=list(
description="Search network",
url="/search/network",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
neighborhood=list(
description="Query Network As CX",
url="/search/network/#NETWORKID#/query",
method="POST",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
)
)
)
)
),
Version_2.0=list(
version="2.0",
connection=list(
description="URL of the NDEx server",
host="http://www.ndexbio.org",
api="/v2"
),
api=list(
serverStatus=list(
description="Get Server Status",
url="/admin/status",
method="GET"
),
user=list(
authenticate=list(
description="Authenticate a User",
url="/user",
method="GET",
params=list(
valid=list(
method="parameter",
tag="valid",
default="true"
)
)
),
create=list(
description="Create a new user",
url="/user",
method="POST"
),
delete=list(
description="Deletes the authenticated user, removing any other objects in the database that depend on the user",
url="/user/#USERID#",
method="DELETE",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/user/#USERID#",
method="PUT",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
get=list(
byName=list(
description="Get User By userName",
url="/user",
method="GET",
params=list(
userName=list(
method="parameter",
tag="username"
)
)
),
byId=list(
description="Get User By UUID",
url="/user/#USERID#",
method="GET",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
)
),
password=list(
change=list(
description="Changes the authenticated user's password to the new password",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
),
mail=list(
description="Causes a new password to be generated for the given user account and then emailed to the user's emailAddress",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
),
forgot=list(
method="parameter",
tag="forgot",
default="true"
)
)
)
),
verify=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/verification",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
code=list(
method="parameter",
tag="verificationCode"
)
)
),
group=list(
get=list(
description="Get User's Permissions in Group",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
group=list(
method="parameter",
tag="groupid"
)
)
),
list=list(
description="List Groups for which a user has the specified permission types",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
permission=list(
get=list(
description="Get User's Permission for Network",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
),
list=list(
description="List User's Network Permissions",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
)
),
showcase=list(
description="Get User's Showcase Networks",
url="/user/#USERID#/showcase",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
networksummary=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/networksummary",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
)
),
group=list(
create=list(
description="Create Group",
url="/group",
method="POST"
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/group/#GROUPID#",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
get=list(
description="Get a Group",
url="/group/#GROUPID#",
method="GET",
params=list(
group=list(
method="replace",
tag="#GROUPID#"
)
)
),
user=list(
list=list(
description="Get Members of a Group",
url="/group/#GROUPID#/membership",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
network=list(
list=list(
description="Get Network Permissions of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
default="READ"
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
),
get=list(
description="Get Members of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid"
)
)
),
update=list(
description="Add or Update a Group Member",
url="/group/#GROUPID#/membership",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
),
type=list(
method="parameter",
tag="type"
)
)
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#/membership",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
)
)
)
)
),
network=list(
create=list(
description="Create a CX Network",
url="/network",
method="POST"
),
update=list(
description="Update a Network",
url="/network/#NETWORKID#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
delete=list(
description="Delete a Network",
url="/network/#NETWORKID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Complete Network in CX format",
url="/network/#NETWORKID#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
summary=list(
get=list(
description="Get Network Summary",
url="/network/#NETWORKID#/summary",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
sample=list(
set=list(
description="Get Network Summary",
url="/network/#NETWORKID#/sample",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Set Network Sample",
url="/network/#NETWORKID#/sample",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
aspect=list(
getMetaData=list(
description="Get Network CX Metadata Collection",
url="/network/#NETWORKID#/aspect",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
getMetaDataByName=list(
description="Get Network Aspect Metadata",
url="/network/#NETWORKID#/aspect/#ASPECT#/metadata",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
),
get=list(
description="Get a Network Aspect As CX",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update an Aspect of a Network",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
)
),
permission=list(
get=list(
description="Get All Permissions on a Network",
url="/network/#NETWORKID#/permission",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
type=list(
tag="type",
method="parameter"
),
permission=list(
tag="permission",
method="parameter",
optional=TRUE
),
start=list(
tag="start",
method="parameter",
optional=TRUE
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update Network Permission",
url="/network/#NETWORKID#/permission",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
),
permission=list(
tag="permission",
method="parameter"
)
)
),
delete=list(
description="Delete Network Permission",
url="/network/#NETWORKID#/permission",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
)
)
)
),
profile=list(
update=list(
description="Update Network Profile",
url="/network/#NETWORKID#/profile",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
systemproperties=list(
set=list(
description="Set Network System Properties",
url="/network/#NETWORKID#/systemproperty",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
properties=list(
set=list(
description="Set Network Properties",
url="/network/#NETWORKID#/properties",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
provenance=list(
set=list(
description="Set Network Provenance",
url="/network/#NETWORKID#/provenance",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Network Provenance",
url="/network/#NETWORKID#/provenance",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
)
),
search=list(
user=list(
description="Search users",
url="/search/user",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
group=list(
description="Search groups",
url="/search/group",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
network=list(
search=list(
description="Search network",
url="/search/network",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
neighborhood=list(
description="Query Network As CX",
url="/search/network/#NETWORKID#/query",
method="POST",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
)
)
)
)
),
Version_1.3=list(
version="1.3",
connection=list(
description="URL of the NDEx server",
host="http://www.ndexbio.org",
api="/rest"
),
api=list(
serverStatus=list(
description="Get Server Status",
url="/admin/status",
method="GET"
),
user=list(
authenticate=list(
description="Authenticate a User",
url="/user/authenticate",
method="GET"
)
),
network=list(
create=list(
description="Create a CX Network",
url="/network/asCX",
method="POST"
),
update=list(
description="Update a Network",
url="/network/asCX/#NETWORKID#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
delete=list(
description="Delete a Network",
url="/network/#NETWORKID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Complete Network in CX format",
url="/network/#NETWORKID#/asCX",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
summary=list(
get=list(
description="Get Network Summary",
url="/network/#NETWORKID#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
aspect=list(
getMetaData=list(
description="Get Network CX Metadata Collection",
url="/network/#NETWORKID#/metadata",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get a Network Aspect As CX",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
),
size=list(
method="append",
optional=TRUE
)
)
)
),
permission=list(
get=list(
description="Get All Permissions on a Network",
url="/network/#NETWORKID#/user/#PERMISSION#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
permission=list(
tag="#PERMISSION#",
method="replace",
default="ALL"
),
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="1000"
)
)
),
update=list(
description="Update Network Permission",
url="/network/#NETWORKID#/member/user/#USERID#",
method="POST",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="#USERID#",
method="replace"
)
)
),
delete=list(
description="Delete Network Permission",
url="/network/#NETWORKID#/member/user/#USERID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="#USERID#",
method="replace"
)
)
)
),
profile=list(
update=list(
description="Update Network Profile",
url="/network/#NETWORKID#/summary",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
systemproperties=list(
set=list(
description="Set Network System Properties",
url="/network/#NETWORKID#/setFlag/readOnly=#VALUE#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
readOnly=list(
tag="#VALUE#",
method="replace"
)
)
)
),
properties=list(
set=list(
description="Set Network Properties",
url="/network/#NETWORKID#/properties",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
provenance=list(
set=list(
description="Set Network Provenance",
url="/network/#NETWORKID#/provenance",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Network Provenance",
url="/network/#NETWORKID#/provenance",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
)
),
search=list(
user=list(
description="Search users",
url="/user/search",
method="POST",
params=list(
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="100"
)
)
),
group=list(
description="Search groups",
url="/group/search",
method="POST",
params=list(
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="100"
)
)
),
network=list(
search=list(
description="Search network",
url="/network/textsearch",
method="POST",
params=list(
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="100"
)
)
),
neighborhood=list(
description="Query Network As CX",
url="/network/#NETWORKID#/asCX/query",
method="POST"
)
)
)
)
)
)
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################################################################################
## Authors:
## Florian Auer [florian.auer@med.uni-goettingen.de]
##
## History:
## Created on 28 November 2016 by Auer
## Switched to yml file on 02 Februar 2017 by Auer
##
## Description:
## Contains API configuration for connecting to NDEx servers
##
## Note:
## This file is automatically generated from a YAML file!
################################################################################
#' NDEx server api configuration
#'
#' This nested list contains the url and methods for accessing the NDEx server via its REST full api.
#' It contains specifications for NDEx server api version 1.3 and 2.0. The default api is specified by 'defaultVersion'.
#' If possible, the version 2.0 should be used.
#' Own configurations must contain a 'version' entry!
#'
#' @return Nested list resembling the NDEx server REST API structure
#' @examples
#' names(ndex_config$Version_2.0)
#' @export
ndex_config = list(
defaultVersion="Version_2.0",
Version_2.1=list(
version="2.1",
connection=list(
description="URL of the NDEx server",
host="http://www.ndexbio.org",
api="/v2"
),
api=list(
serverStatus=list(
description="Get Server Status",
url="/admin/status",
method="GET",
params=list(
format=list(
method="parameter",
tag="format",
default="standard"
)
)
),
user=list(
authenticate=list(
description="Authenticate a User",
url="/user",
method="GET",
params=list(
valid=list(
method="parameter",
tag="valid",
default="true"
)
)
),
create=list(
description="Create a new user",
url="/user",
method="POST"
),
delete=list(
description="Deletes the authenticated user, removing any other objects in the database that depend on the user",
url="/user/#USERID#",
method="DELETE",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/user/#USERID#",
method="PUT",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
get=list(
byName=list(
description="Get User By userName",
url="/user",
method="GET",
params=list(
userName=list(
method="parameter",
tag="username"
)
)
),
byId=list(
description="Get User By UUID",
url="/user/#USERID#",
method="GET",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
)
),
password=list(
change=list(
description="Changes the authenticated user's password to the new password",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
),
mail=list(
description="Causes a new password to be generated for the given user account and then emailed to the user's emailAddress",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
),
forgot=list(
method="parameter",
tag="forgot",
default="true"
)
)
)
),
verify=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/verification",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
code=list(
method="parameter",
tag="verificationCode"
)
)
),
group=list(
get=list(
description="Get User's Permissions in Group",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
group=list(
method="parameter",
tag="groupid"
)
)
),
list=list(
description="List Groups for which a user has the specified permission types",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
permission=list(
get=list(
description="Get User's Permission for Network",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
),
list=list(
description="List User's Network Permissions",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
)
),
showcase=list(
description="Get User's Showcase Networks",
url="/user/#USERID#/showcase",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
networksummary=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/networksummary",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
)
),
group=list(
create=list(
description="Create Group",
url="/group",
method="POST"
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/group/#GROUPID#",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
get=list(
description="Get a Group",
url="/group/#GROUPID#",
method="GET",
params=list(
group=list(
method="replace",
tag="#GROUPID#"
)
)
),
user=list(
list=list(
description="Get Members of a Group",
url="/group/#GROUPID#/membership",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
network=list(
list=list(
description="Get Network Permissions of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
default="READ"
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
),
get=list(
description="Get Members of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid"
)
)
),
update=list(
description="Add or Update a Group Member",
url="/group/#GROUPID#/membership",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
),
type=list(
method="parameter",
tag="type"
)
)
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#/membership",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
)
)
)
)
),
network=list(
create=list(
description="Create a CX Network",
url="/network",
method="POST"
),
update=list(
description="Update a Network",
url="/network/#NETWORKID#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
delete=list(
description="Delete a Network",
url="/network/#NETWORKID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Complete Network in CX format",
url="/network/#NETWORKID#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
summary=list(
get=list(
description="Get Network Summary",
url="/network/#NETWORKID#/summary",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
sample=list(
set=list(
description="Get Network Summary",
url="/network/#NETWORKID#/sample",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Set Network Sample",
url="/network/#NETWORKID#/sample",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
aspect=list(
getMetaData=list(
description="Get Network CX Metadata Collection",
url="/network/#NETWORKID#/aspect",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
getMetaDataByName=list(
description="Get Network Aspect Metadata",
url="/network/#NETWORKID#/aspect/#ASPECT#/metadata",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
),
get=list(
description="Get a Network Aspect As CX",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update an Aspect of a Network",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
)
),
permission=list(
get=list(
description="Get All Permissions on a Network",
url="/network/#NETWORKID#/permission",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
type=list(
tag="type",
method="parameter"
),
permission=list(
tag="permission",
method="parameter",
optional=TRUE
),
start=list(
tag="start",
method="parameter",
optional=TRUE
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update Network Permission",
url="/network/#NETWORKID#/permission",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
),
permission=list(
tag="permission",
method="parameter"
)
)
),
delete=list(
description="Delete Network Permission",
url="/network/#NETWORKID#/permission",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
)
)
)
),
profile=list(
update=list(
description="Update Network Profile",
url="/network/#NETWORKID#/profile",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
systemproperties=list(
set=list(
description="Set Network System Properties",
url="/network/#NETWORKID#/systemproperty",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
properties=list(
set=list(
description="Set Network Properties",
url="/network/#NETWORKID#/properties",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
provenance=list(
set=list(
description="Set Network Provenance",
url="/network/#NETWORKID#/provenance",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Network Provenance",
url="/network/#NETWORKID#/provenance",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
)
),
search=list(
user=list(
description="Search users",
url="/search/user",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
group=list(
description="Search groups",
url="/search/group",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
network=list(
search=list(
description="Search network",
url="/search/network",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
neighborhood=list(
description="Query Network As CX",
url="/search/network/#NETWORKID#/query",
method="POST",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
)
)
)
)
),
Version_2.0=list(
version="2.0",
connection=list(
description="URL of the NDEx server",
host="http://www.ndexbio.org",
api="/v2"
),
api=list(
serverStatus=list(
description="Get Server Status",
url="/admin/status",
method="GET"
),
user=list(
authenticate=list(
description="Authenticate a User",
url="/user",
method="GET",
params=list(
valid=list(
method="parameter",
tag="valid",
default="true"
)
)
),
create=list(
description="Create a new user",
url="/user",
method="POST"
),
delete=list(
description="Deletes the authenticated user, removing any other objects in the database that depend on the user",
url="/user/#USERID#",
method="DELETE",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/user/#USERID#",
method="PUT",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
get=list(
byName=list(
description="Get User By userName",
url="/user",
method="GET",
params=list(
userName=list(
method="parameter",
tag="username"
)
)
),
byId=list(
description="Get User By UUID",
url="/user/#USERID#",
method="GET",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
)
),
password=list(
change=list(
description="Changes the authenticated user's password to the new password",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
)
)
),
mail=list(
description="Causes a new password to be generated for the given user account and then emailed to the user's emailAddress",
url="/user/#USERID#/password",
method="PUT",
params=list(
user=list(
method="replace",
tag="#USERID#"
),
forgot=list(
method="parameter",
tag="forgot",
default="true"
)
)
)
),
verify=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/verification",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
code=list(
method="parameter",
tag="verificationCode"
)
)
),
group=list(
get=list(
description="Get User's Permissions in Group",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
group=list(
method="parameter",
tag="groupid"
)
)
),
list=list(
description="List Groups for which a user has the specified permission types",
url="/user/#USERID#/membership",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
permission=list(
get=list(
description="Get User's Permission for Network",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
),
list=list(
description="List User's Network Permissions",
url="/user/#USERID#/permission",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
),
directonly=list(
method="parameter",
tag="directonly",
default="false"
)
)
)
),
showcase=list(
description="Get User's Showcase Networks",
url="/user/#USERID#/showcase",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
),
networksummary=list(
description="Verify a User with verificationCode",
url="/user/#USERID#/networksummary",
method="GET",
params=list(
user=list(
tag="#USERID#",
method="replace"
)
)
)
),
group=list(
create=list(
description="Create Group",
url="/group",
method="POST"
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
update=list(
description="Updates the authenticated user based on the serialized user object in the PUT data",
url="/group/#GROUPID#",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
)
)
),
get=list(
description="Get a Group",
url="/group/#GROUPID#",
method="GET",
params=list(
group=list(
method="replace",
tag="#GROUPID#"
)
)
),
user=list(
list=list(
description="Get Members of a Group",
url="/group/#GROUPID#/membership",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
type=list(
method="parameter",
tag="type",
optional=TRUE
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
)
),
network=list(
list=list(
description="Get Network Permissions of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
permission=list(
method="parameter",
tag="permission",
default="READ"
),
start=list(
method="parameter",
tag="start",
optional=TRUE
),
size=list(
method="parameter",
tag="size",
optional=TRUE
)
)
),
get=list(
description="Get Members of a Group",
url="/group/#GROUPID#/permission",
method="GET",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
network=list(
method="parameter",
tag="networkid"
)
)
),
update=list(
description="Add or Update a Group Member",
url="/group/#GROUPID#/membership",
method="PUT",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
),
type=list(
method="parameter",
tag="type"
)
)
),
delete=list(
description="Delete the group specified by groupId",
url="/group/#GROUPID#/membership",
method="DELETE",
params=list(
group=list(
tag="#GROUPID#",
method="replace"
),
user=list(
method="parameter",
tag="userid"
)
)
)
)
),
network=list(
create=list(
description="Create a CX Network",
url="/network",
method="POST"
),
update=list(
description="Update a Network",
url="/network/#NETWORKID#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
delete=list(
description="Delete a Network",
url="/network/#NETWORKID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Complete Network in CX format",
url="/network/#NETWORKID#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
summary=list(
get=list(
description="Get Network Summary",
url="/network/#NETWORKID#/summary",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
sample=list(
set=list(
description="Get Network Summary",
url="/network/#NETWORKID#/sample",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Set Network Sample",
url="/network/#NETWORKID#/sample",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
aspect=list(
getMetaData=list(
description="Get Network CX Metadata Collection",
url="/network/#NETWORKID#/aspect",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
getMetaDataByName=list(
description="Get Network Aspect Metadata",
url="/network/#NETWORKID#/aspect/#ASPECT#/metadata",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
),
get=list(
description="Get a Network Aspect As CX",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update an Aspect of a Network",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
)
)
)
),
permission=list(
get=list(
description="Get All Permissions on a Network",
url="/network/#NETWORKID#/permission",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
type=list(
tag="type",
method="parameter"
),
permission=list(
tag="permission",
method="parameter",
optional=TRUE
),
start=list(
tag="start",
method="parameter",
optional=TRUE
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
),
update=list(
description="Update Network Permission",
url="/network/#NETWORKID#/permission",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
),
permission=list(
tag="permission",
method="parameter"
)
)
),
delete=list(
description="Delete Network Permission",
url="/network/#NETWORKID#/permission",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="userid",
method="parameter",
optional=TRUE
),
group=list(
tag="groupid",
method="parameter",
optional=TRUE
)
)
)
),
profile=list(
update=list(
description="Update Network Profile",
url="/network/#NETWORKID#/profile",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
systemproperties=list(
set=list(
description="Set Network System Properties",
url="/network/#NETWORKID#/systemproperty",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
properties=list(
set=list(
description="Set Network Properties",
url="/network/#NETWORKID#/properties",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
provenance=list(
set=list(
description="Set Network Provenance",
url="/network/#NETWORKID#/provenance",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Network Provenance",
url="/network/#NETWORKID#/provenance",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
)
),
search=list(
user=list(
description="Search users",
url="/search/user",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
group=list(
description="Search groups",
url="/search/group",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
network=list(
search=list(
description="Search network",
url="/search/network",
method="POST",
params=list(
start=list(
tag="start",
method="parameter",
default="0"
),
size=list(
tag="size",
method="parameter",
default="100"
)
)
),
neighborhood=list(
description="Query Network As CX",
url="/search/network/#NETWORKID#/query",
method="POST",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
size=list(
tag="size",
method="parameter",
optional=TRUE
)
)
)
)
)
)
),
Version_1.3=list(
version="1.3",
connection=list(
description="URL of the NDEx server",
host="http://www.ndexbio.org",
api="/rest"
),
api=list(
serverStatus=list(
description="Get Server Status",
url="/admin/status",
method="GET"
),
user=list(
authenticate=list(
description="Authenticate a User",
url="/user/authenticate",
method="GET"
)
),
network=list(
create=list(
description="Create a CX Network",
url="/network/asCX",
method="POST"
),
update=list(
description="Update a Network",
url="/network/asCX/#NETWORKID#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
delete=list(
description="Delete a Network",
url="/network/#NETWORKID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Complete Network in CX format",
url="/network/#NETWORKID#/asCX",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
summary=list(
get=list(
description="Get Network Summary",
url="/network/#NETWORKID#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
aspect=list(
getMetaData=list(
description="Get Network CX Metadata Collection",
url="/network/#NETWORKID#/metadata",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get a Network Aspect As CX",
url="/network/#NETWORKID#/aspect/#ASPECT#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
aspect=list(
tag="#ASPECT#",
method="replace"
),
size=list(
method="append",
optional=TRUE
)
)
)
),
permission=list(
get=list(
description="Get All Permissions on a Network",
url="/network/#NETWORKID#/user/#PERMISSION#",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
permission=list(
tag="#PERMISSION#",
method="replace",
default="ALL"
),
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="1000"
)
)
),
update=list(
description="Update Network Permission",
url="/network/#NETWORKID#/member/user/#USERID#",
method="POST",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="#USERID#",
method="replace"
)
)
),
delete=list(
description="Delete Network Permission",
url="/network/#NETWORKID#/member/user/#USERID#",
method="DELETE",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
user=list(
tag="#USERID#",
method="replace"
)
)
)
),
profile=list(
update=list(
description="Update Network Profile",
url="/network/#NETWORKID#/summary",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
systemproperties=list(
set=list(
description="Set Network System Properties",
url="/network/#NETWORKID#/setFlag/readOnly=#VALUE#",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
),
readOnly=list(
tag="#VALUE#",
method="replace"
)
)
)
),
properties=list(
set=list(
description="Set Network Properties",
url="/network/#NETWORKID#/properties",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
),
provenance=list(
set=list(
description="Set Network Provenance",
url="/network/#NETWORKID#/provenance",
method="PUT",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
),
get=list(
description="Get Network Provenance",
url="/network/#NETWORKID#/provenance",
method="GET",
params=list(
network=list(
tag="#NETWORKID#",
method="replace"
)
)
)
)
),
search=list(
user=list(
description="Search users",
url="/user/search",
method="POST",
params=list(
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="100"
)
)
),
group=list(
description="Search groups",
url="/group/search",
method="POST",
params=list(
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="100"
)
)
),
network=list(
search=list(
description="Search network",
url="/network/textsearch",
method="POST",
params=list(
start=list(
method="append",
default="0"
),
size=list(
method="append",
default="100"
)
)
),
neighborhood=list(
description="Query Network As CX",
url="/network/#NETWORKID#/asCX/query",
method="POST"
)
)
)
)
)
)
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