netSmooth: Network smoothing for scRNAseq

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

Building PPIs from StringDB Introduction to netSmooth package

Vignettes Man pages API and functions Files

Package details
Author	Jonathan Ronen [aut, cre], Altuna Akalin [aut]
Bioconductor views	Clustering DimensionReduction GeneExpression GraphAndNetwork Network Normalization Preprocessing RNASeq Sequencing SingleCell Transcriptomics
Maintainer	Jonathan Ronen <yablee@gmail.com>
License	GPL-3
Version	1.10.0
URL	https://github.com/BIMSBbioinfo/netSmooth
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("netSmooth")`