spectra_metadata_colourScheme_UI_helper: UI export plot helper - sample colour

Description Usage Arguments Value Examples

View source: R/GUI_utils.R

Description

Return a vector of spectra colours based on a metadata column

Usage

1
2
3
4

Arguments

annot

(peakPantheRAnnotation) Annotation object

splColrColumn

(str) NULL, None or a spectraMetadata column for colouring each sample

Value

(character) Vector of colours

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
## Initialise a peakPantheRAnnotation object with 3 samples and 2 targeted
## compounds

# Paths to spectra files
spectraPaths <- c('./path/file1', './path/file2', './path/file3')

# targetFeatTable
targetFeatTable <- data.frame(matrix(vector(), 2, 8, dimnames=list(c(),
                    c('cpdID','cpdName','rtMin','rt','rtMax','mzMin','mz',
                    'mzMax'))), stringsAsFactors=FALSE)
targetFeatTable[1,] <- c('ID-1', 'Cpd 1', 3310., 3344.888, 3390., 522.194778,
                        522.2, 522.205222)
targetFeatTable[2,] <- c('ID-2', 'Cpd 2', 3280., 3385.577, 3440., 496.195038,
                        496.2, 496.204962)
targetFeatTable[,c(3:8)] <- vapply(targetFeatTable[,c(3:8)], as.numeric,
                                    FUN.VALUE=numeric(2))

emptyAnnotation <- peakPantheRAnnotation(spectraPaths=spectraPaths,
                                        targetFeatTable=targetFeatTable)

# colour scheme with no spectraMetadata
outputAnnotationFeatureMetadata_UI_helper(emptyAnnotation)
# NULL

peakPantheR documentation built on Nov. 8, 2020, 6:38 p.m.