intersect_taxa: Returns the intersection of species and samples for the...
In phyloseq: Handling and analysis of high-throughput microbiome census data
Description
Usage
Arguments
Value
See Also
Examples
View source: R/phyloseq-class.R
Description
This function is used internally as part of the infrastructure to ensure that
component data types in a phyloseq-object have exactly the same taxa/species.
It relies heavily on the Reduce function to determine the
strictly common species.
Usage
1
Arguments
x
(Required). A phyloseq-class object
that contains 2 or more components
that in-turn describe species/taxa.
Value
Returns a character vector of only those species that are present in
all species-describing components of x.
See Also
Examples
1
2
3
#
## data(GlobalPatterns)
## head(intersect_taxa(GlobalPatterns), 10)
Example output
phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.
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Description Usage Arguments Value See Also Examples
View source: R/phyloseq-class.R
Description
This function is used internally as part of the infrastructure to ensure that
component data types in a phyloseq-object have exactly the same taxa/species.
It relies heavily on the Reduce function to determine the
strictly common species.
Usage
1 |
Arguments
x |
(Required). A |
Value
Returns a character vector of only those species that are present in
all species-describing components of x.
See Also
Examples
1 2 3 | #
## data(GlobalPatterns)
## head(intersect_taxa(GlobalPatterns), 10)
|
Example output
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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