otu_table-class: The S4 class for storing taxa-abundance information.
In phyloseq: Handling and analysis of high-throughput microbiome census data
Description
Because orientation of these tables can vary by method, the orientation is
defined explicitly in the taxa_are_rows slot (a logical).
The otu_table class inherits the matrix class to store
abundance values.
Various standard subset and assignment nomenclature has been extended to apply
to the otu_table class, including square-bracket, t, etc.
Details
- taxa_are_rows
-
A single logical specifying the orientation of the abundance table.
- .Data
This slot is inherited from the matrix class.
phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.
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Description
Because orientation of these tables can vary by method, the orientation is
defined explicitly in the taxa_are_rows slot (a logical).
The otu_table class inherits the matrix class to store
abundance values.
Various standard subset and assignment nomenclature has been extended to apply
to the otu_table class, including square-bracket, t, etc.
Details
- taxa_are_rows
-
A single logical specifying the orientation of the abundance table.
- .Data
This slot is inherited from the
matrixclass.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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