taxa_sums: Returns the total number of individuals observed from each...
In phyloseq: Handling and analysis of high-throughput microbiome census data
Description
Usage
Arguments
Value
See Also
Examples
View source: R/otuTable-class.R
Description
A convenience function equivalent to rowSums or colSums, but where
the orientation of the otu_table is automatically handled.
Usage
1
taxa_sums(x)
Arguments
x
otu_table-class, or phyloseq-class.
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the sum of
all individuals observed for each taxa in x.
See Also
Examples
1
2
3
4
Example output
-1 Bacteria
66.69027970 0.00458177
Prosthecochloris Chloroflexus
0.00082242 0.00232782
Dehalococcoides Thermus
0.00754172 0.00285077
Listeria Fusobacterium
0.00582994 0.03092906
Streptobacillus Brevibacillus
0.00351251 0.00107373
Acidobacteria_Gp1_Gp1 Paenibacillus
0.00221573 0.00530530
Bartonella Beijerinckia
0.00193928 0.00058589
Bradyrhizobium Brucella
0.00319319 0.00183319
Methylobacterium Mesorhizobium
0.00712897 0.00091167
Rhizobium Parvibaculum
0.00772734 0.00111923
Paracoccus Gluconacetobacter
0.00143452 0.00183311
Granulibacter Gemella
0.00116584 0.00348100
Azospirillum Macrococcus
0.00212196 0.00153754
Magnetospirillum Rhodospirillum
0.00181158 0.00166739
Staphylococcus Rickettsia
0.01391987 0.00421433
Pelagibacter Erythrobacter
0.00106001 0.00116605
Sphingobium Achromobacter
0.00134135 0.00146257
Bordetella Burkholderia
0.00573100 0.01305504
Cupriavidus Polynucleobacter
0.00484794 0.00104432
Ralstonia Acidovorax
0.00802453 0.00166620
Comamonas Delftia
0.00160896 0.00164925
Diaphorobacter Polaromonas
0.00271157 0.00236425
Rhodoferax Variovorax
0.00092722 0.00161902
Verminephrobacter Herminiimonas
0.00123459 0.00169237
Oxalobacter Leptothrix
0.03595129 0.00215029
Methylibium Thiomonas
0.00183416 0.00165329
Thiobacillus Methylobacillus
0.00224340 0.00105134
Neisseriaceae Chromobacterium
0.00175744 0.00228898
Kingella Laribacter
0.00119170 0.00211969
Abiotrophia Neisseria
0.00158194 0.01069643
Simonsiella Aerococcus
0.00054082 0.00195280
Nitrosomonas Nitrosospira
0.00147926 0.00061315
Azoarcus Thauera
0.00338705 0.00269011
Desulfotalea Desulfovibrio
0.00070496 0.22501930
Lawsonia Pelobacter
0.00457686 0.00362370
Geobacter Anaeromyxobacter
0.01038265 0.00650752
Syntrophus Granulicatella
0.00104040 0.00997710
Campylobacter Helicobacter
0.00979163 0.01119535
Aeromonas Tolumonas
0.00273002 0.00088996
Idiomarina Shewanella
0.00041954 0.00454837
Cardiobacterium Nitrosococcus
0.00186737 0.00099010
Enterococcus Thioalkalivibrio
0.20215118 0.00406134
Enterobacteriaceae Citrobacter
0.03431197 0.11959797
Cronobacter Dickeya
0.00330260 0.00274109
Edwardsiella Enterobacter
0.00437376 0.07410547
Erwinia Escherichia/Shigella
0.00221133 0.65034209
Klebsiella Lactobacillus
0.46276816 0.50420963
Pantoea Pectobacterium
0.00079598 0.00180255
Photorhabdus Proteus
0.00065805 0.00147246
Providencia Salmonella
0.00163626 0.01355244
Serratia Sodalis
0.00328415 0.00122985
Pediococcus Xenorhabdus
0.00386460 0.00039984
Yersinia Leuconostoc
0.00362060 0.00768765
Weissella Lactococcus
0.18048236 0.05569888
Pasteurellaceae Actinobacillus
0.00175222 0.00415967
Aggregatibacter Haemophilus
0.00782746 0.02737157
Histophilus Streptococcus
0.00216099 1.53568729
Pasteurella Acinetobacter
0.01052131 0.00704863
Enhydrobacter Azotobacter
0.00040129 0.00130359
Cellvibrio Pseudomonas
0.00054397 0.01181105
Clostridiales Aliivibrio
0.20497661 0.00077096
Photobacterium Vibrio
0.00033788 0.00187119
Stenotrophomonas Xanthomonas
0.00266772 0.00472843
Brachyspira Treponema
0.00998320 0.00697346
Aminobacterium Aminomonas
0.00089127 0.00285349
Pyramidobacter Acholeplasma
0.02298418 0.01216627
Entomoplasmataceae Mesoplasma
0.00546934 0.00471749
Mycoplasma Verrucomicrobia
0.02129199 0.00028319
Akkermansia Opitutus
1.09547762 0.00137480
Coraliomargarita Methanobrevibacter
0.00479792 0.35347676
Methanosphaera Methanocella
0.00499565 0.00130100
Cyanobacteria Family_XII_GpXII
0.00563133 0.00023162
Cyanobacteria_Family_XI_GpXI Family_IX_GpIX
0.00026107 0.00032015
Megasphaera Acidaminococcus
0.61969740 0.44110863
Mitsuokella Selenomonas
0.31806392 0.02559633
Veillonella Dialister
0.14110228 1.42272619
Ruminococcaceae Subdoligranulum
1.22978463 5.39863348
Faecalibacterium Acetivibrio
21.82419346 0.03524290
Anaerotruncus Ruminococcus
1.20128710 3.96077951
Alkaliphilus Clostridium
0.00497672 0.46526836
Symbiobacterium Thermincola
0.00627358 0.00008202
Desulfitobacterium Desulfotomaculum
0.00416770 0.00384273
Pelotomaculum Finegoldia
0.00268721 0.01089866
Peptoniphilus Parvimonas
0.00928805 0.00780893
Anaerococcus Syntrophomonas
0.01656429 0.00151672
Syntrophothermus Peptostreptococcaceae
0.00124377 0.06582446
Filifactor Sporacetigenium
0.00530569 0.23544929
Peptostreptococcus Heliobacterium
0.01759438 0.00641223
Lachnospiraceae Oribacterium
4.89072231 0.10640267
Coprococcus Roseburia
3.98779862 10.44074284
Catonella Dorea
0.02113814 4.75992985
Shuttleworthia Anaerostipes
0.01945653 0.63041585
Anaerofustis Eubacterium
0.00688658 2.66485726
Blautia Anaerosporobacter
39.70520018 0.01272877
Marvinbryantia Carboxydothermus
0.06137255 0.00158667
Caldicellulosiruptor Halothermothrix
0.00369963 0.00126804
Ammonifex Caldanaerobacter
0.00209591 0.00168344
Moorella Thermoanaerobacter
0.00287961 0.00622298
Bulleidia Catenibacterium
0.00651488 1.36332688
Coprobacillus Erysipelothrix
1.67292458 0.00244824
Holdemania Turicibacter
0.14611602 0.38261293
Bacteroides Porphyromonadaceae
54.20938123 0.00379938
Parabacteroides Porphyromonas
3.03194310 0.04402194
Prevotella Alistipes
12.74933479 6.61685718
Capnocytophaga Chryseobacterium
0.00515406 0.00278157
Croceibacter Zunongwangia
0.00090996 0.00135715
Cytophaga Dyadobacter
0.00097937 0.00156247
Bacillales Pedobacter
0.00130368 0.00114882
Sphingobacterium Alicyclobacillus
0.00298243 0.00301346
Actinomycetales Actinomyces
0.00141772 0.07261326
Mobiluncus Corynebacterium
0.00457600 0.02197762
Gordonia Nocardia
0.00075607 0.00111320
Anoxybacillus Rhodococcus
0.00107387 0.00319731
Bacillus Stackebrandtia
0.01325885 0.00104626
Brevibacterium Exiguobacterium
0.00060986 0.00259790
Kytococcus Geobacillus
0.00182472 0.00464483
Micrococcus Rothia
0.00322387 0.01824507
Xylanimonas Oceanobacillus
0.00173565 0.00120638
Propionibacterium Saccharopolyspora
0.02153265 0.00106482
Streptomyces Bifidobacterium
0.00411868 3.74026901
Gardnerella Parascardovia
0.00279001 0.00285583
Scardovia Atopobium
0.00133838 0.01725626
Collinsella Cryptobacterium
4.66666892 0.00280331
Eggerthella Gordonibacter
0.28623714 0.10806799
Slackia Acetobacter
0.11663171 0.00084421
Acidimicrobium Acidiphilium
0.00091850 0.00166701
Acidithiobacillus Acidobacteria_Gp3_Gp3
0.00108284 0.00083216
Acidothermus Actinosynnema
0.00086657 0.00129031
Aeromicrobium Aeropyrum
0.00130374 0.00016533
Afipia Alcanivorax
0.00096464 0.00054619
Alkalilimnicola Allochromatium
0.00164839 0.00190396
Alphaproteobacteria Alteromonas
0.00083168 0.00022626
Anaerobaculum Anaplasma
0.00068248 0.00193131
Aquifex Arcanobacterium
0.00043216 0.00089813
Archaeoglobus Arcobacter
0.00031853 0.00179208
Arsenophonus Arthrobacter
0.00084488 0.00257418
Azorhizobium Bdellovibrio
0.00143155 0.00055052
Beutenbergia Borrelia
0.00122149 0.00468069
Brachybacterium Bradyrhizobiaceae
0.00183860 0.00136004
Caldivirga Candidatus_Korarchaeum
0.00004825 0.00009704
Catenulispora Caulobacter
0.00108706 0.00487912
Cellulomonas Chitinophaga
0.00150291 0.00086849
Chlamydia Chlamydophila
0.00114372 0.00119118
Chlorobaculum Chlorobiaceae
0.00253600 0.00096597
Chlorobium Chloroherpeton
0.00869556 0.00068725
Chromohalobacter Clavibacter
0.00123739 0.00276325
Colwellia Conexibacter
0.00023036 0.00193241
Coprothermobacter Cyanobacteria_Family_II_GpIIa
0.00053690 0.00862041
Cyanobacteria_Family_II_GpIIb Cyanobacteria_Family_I_GpI
0.00073397 0.03298265
Deferribacter Dehalogenimonas
0.00100301 0.00146033
Deinococcus Denitrovibrio
0.00512927 0.00079607
Desulfatibacillum Desulfobacteraceae
0.00094861 0.00152385
Desulfobacterium Desulfohalobium
0.00058160 0.00119227
Desulfomicrobium Desulfurivibrio
0.00227261 0.00177949
Desulfurococcus Dichelobacter
0.00007140 0.00098868
Dictyoglomus Dinoroseobacter
0.00158857 0.00103994
Ehrlichia Ensifer
0.00135193 0.00299905
Family_X_GpX Ferribacterium
0.00041087 0.00130073
Ferroglobus Fervidobacterium
0.00012124 0.00060198
Fibrobacter Flavobacteriales
0.00269070 0.01042306
Flavobacterium Francisella
0.00215030 0.00191908
Frankineae Gammaproteobacteria
0.00257548 0.00180443
Gemmatimonas Geodermatophilus
0.00100541 0.00132499
Glaciecola Gluconobacter
0.00020200 0.00117723
Gramella Hahella
0.00085016 0.00044339
Haliangium Haloarcula
0.00144262 0.00044457
Halobacterium Haloferax
0.00083904 0.00092107
Halomicrobium Haloquadratum
0.00061407 0.00010531
Halorhabdus Halorhodospira
0.00046147 0.00171776
Halorubrum Haloterrigena
0.00055848 0.00061923
Halothiobacillus Herpetosiphon
0.00074708 0.00026781
Hirschia Hydrogenobacter
0.00035258 0.00033564
Hydrogenobaculum Hyperthermus
0.00041302 0.00011025
Hyphomicrobium Hyphomonas
0.00096455 0.00097486
Ignicoccus Jonesia
0.00016604 0.00056282
Jonquetella Kangiella
0.00365302 0.00043391
Kineococcus Kocuria
0.00141457 0.00171611
Kosmotoga Kribbella
0.00051101 0.00102494
Legionella Leifsonia
0.00084551 0.00120035
Leptospira Leptotrichia
0.00110206 0.00446508
Lysinibacillus Maricaulis
0.00078260 0.00096472
Marinobacter Marinomonas
0.00072927 0.00025965
Meiothermus Metallosphaera
0.00247036 0.00005663
Methanocaldococcus Methanococcoides
0.00109880 0.00026110
Methanococcus Methanocorpusculum
0.00247422 0.00094915
Methanoculleus Methanohalophilus
0.00082321 0.00026565
Methanomicrobiales Methanopyrus
0.00041484 0.00027488
Methanosaeta Methanosarcina
0.00023677 0.00068737
Methanosarcinaceae Methanosphaerula
0.00025048 0.00038901
Methanospirillum Methanothermobacter
0.00025372 0.00016949
Methylocella Methylococcus
0.00089414 0.00135627
Methylophilaceae Methylotenera
0.00035374 0.00048892
Methylovorus Moraxella
0.00103879 0.00048137
Mycobacterium Myxococcus
0.00767119 0.00137513
Nakamurella Nanoarchaeum
0.00110669 0.00014265
Natranaerobius Natrialba
0.00087487 0.00045822
Natronomonas Nautilia
0.00051895 0.00127648
Neorickettsia Nitratiruptor
0.00065119 0.00056253
Nitrobacter Nocardioides
0.00149979 0.00126654
Nocardiopsis Novosphingobium
0.00124495 0.00127104
Ochrobactrum Oenococcus
0.00073607 0.00097818
Orientia Parachlamydia
0.00043260 0.00034875
Persephonella Petrotoga
0.00062854 0.00059886
Phenylobacterium Phyllobacteriaceae
0.00171942 0.00085987
Picrophilus Pirellula
0.00017511 0.00039168
Planctomyces Propionivibrio
0.00032715 0.00110804
Proteobacteria Pseudoalteromonas
0.00232907 0.00030058
Psychrobacter Psychromonas
0.00083511 0.00033842
Pyrobaculum Pyrococcus
0.00075319 0.00031000
Renibacterium Rhizobiales
0.00035287 0.00041085
Rhodobacter Rhodobacteraceae
0.00507070 0.00070675
Rhodocista Rhodocyclaceae
0.00209089 0.00137622
Rhodopirellula Rhodopseudomonas
0.00024952 0.00377956
Rhodospirillaceae Rhodothermus
0.00058826 0.00275501
Robiginitalea Roseobacter
0.00230136 0.00059423
Roseomonas Rubrobacter
0.00208591 0.00193784
Ruegeria Saccharomonospora
0.00079294 0.00077462
Saccharophagus Salinibacter
0.00025332 0.00189348
Salinispora Sanguibacter
0.00146796 0.00126906
Sebaldella Segniliparus
0.00103754 0.00087044
Silicibacter Sorangium
0.00110343 0.00106457
Sphaerobacter Sphingobacteriales
0.00164840 0.00054822
Sphingomonas Sphingopyxis
0.00358193 0.00132144
Spirosoma Staphylothermus
0.00091596 0.00018541
Starkeya Streptosporangium
0.00169426 0.00114864
Sulfolobus Sulfurihydrogenibium
0.00037033 0.00170656
Sulfurimonas Sulfurospirillum
0.00058147 0.00041111
Sulfurovum Syntrophobacter
0.00072653 0.00093800
Teredinibacter Thermoanaerobacteraceae
0.00040461 0.00250954
Thermobifida Thermobispora
0.00100580 0.00137072
Thermococcus Thermocrinis
0.00110633 0.00031603
Thermodesulfovibrio Thermofilum
0.00104401 0.00016366
Thermomicrobia Thermomicrobium
0.00053701 0.00087099
Thermomonospora Thermoplasma
0.00166619 0.00026147
Thermoplasmatales Thermoprotei
0.00020915 0.00044554
Thermosipho Thermosphaera
0.00183152 0.00007803
Thermotoga Thiomicrospira
0.00220682 0.00043263
Tropheryma Truepera
0.00069540 0.00147649
Tsukamurella Ureaplasma
0.00092281 0.00299317
Waddlia Wolinella
0.00043304 0.00044917
Xanthobacter Xylella
0.00139448 0.00092236
Zymomonas Papillibacter
0.00107465 0.00156635
Anaerovorax Parasporobacterium
0.19550075 0.00302696
Chrysiogenes Solobacterium
0.00038058 0.06907566
Sarcina Olsenella
0.01279653 0.84990179
Lachnobacterium Anaeroglobus
0.10836429 0.00119452
Dysgonomonas Megamonas
0.00066549 0.36924016
Gallicola Sneathia
0.00009701 0.00116420
Victivallis Varibaculum
0.02512070 0.00203794
Solirubrobacter Allisonella
0.00324644 0.03193786
Tepidibacter Hespellia
0.19548199 0.46287809
Bryantella Mahella
0.11766296 0.00182728
Ethanoligenens Soehngenia
0.04034634 0.00333455
Acetanaerobacterium Peptococcus
0.04563573 0.02300247
Carnobacterium Rikenella
0.00006580 0.00052925
Odoribacter Acetitomaculum
0.30417135 0.00015691
Phascolarctobacterium Coriobacterium
0.48340852 0.00054267
Microbacterium Acetobacterium
0.00039525 0.00248405
Luteococcus Geosporobacter
0.00078195 0.00078618
Barnesiella Zymophilus
0.58559914 0.00128305
Howardella Sutterella
0.52128304 1.43979308
Succiniclasticum Lactonifactor
0.04664238 0.06331713
Moryella Sporobacter
0.00005176 0.04286789
Oscillibacter Pseudobutyrivibrio
3.40962830 0.80995294
Cloacibacillus Hallella
0.04595382 0.04136237
Anaerofilum Asaccharobacter
0.02120422 0.11645617
Xylanibacter Escherichia
0.21351285 0.02409152
Butyricimonas Paraprevotella
0.18390973 0.26952708
Parasutterella Enterorhabdus
0.69711948 0.00120235
Butyricicoccus Robinsoniella
0.39954970 0.01468759
Hydrogenoanaerobacterium Thermotalea
0.04365056 0.00106958
Paraeggerthella Anaerobacter
0.00196165 0.00227288
Desulfocurvus Fusibacter
0.01174536 0.03366236
Actinobaculum Asticcacaulis
0.00012901 0.00196820
Succinispira Butyrivibrio
0.00690521 0.01224009
Desulfonispora Syntrophococcus
0.00011498 0.07328654
Mogibacterium
0.01676015
59_8_22 59_5_13 59_8_12 65_3_22 65_5_1 65_1_10 65_7_12 59_6_1 65_2_17 65_9_26
74 2 15 3 1 1 14 1 10 3
65_5_18 65_7_5 65_8_12 65_9_1 59_9_26 9_6_28 65_7_4 65_4_26 9_2_24 65_1_17
1 2 1 3 4 1 7 1 1 3
65_6_7 9_4_3 65_7_18 65_8_7 59_4_5 59_5_2 65_6_2 65_4_10 9_7_25 9_4_5
1 1 1 3 3 9 20 5 7 3
65_1_8 65_2_5 59_7_6 59_9_31 9_1_7 9_4_13 9_6_3 65_4_5 59_9_18 65_9_13
2 4 96 16 1 1 2 1 7 4
65_3_18 65_6_10 9_7_18 65_8_25 59_3_5 65_8_29 65_4_20 59_6_11 59_9_17 9_4_6
9 1 1 2 1 2 1 1 8 6
59_4_25 59_3_21 59_3_19 59_4_16 59_8_3 59_5_19 65_9_9 59_2_6
11 8 1 1 4 66 2 217
phyloseq documentation built on Nov. 8, 2020, 6:41 p.m.
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Description Usage Arguments Value See Also Examples
View source: R/otuTable-class.R
Description
A convenience function equivalent to rowSums or colSums, but where the orientation of the otu_table is automatically handled.
Usage
1 | taxa_sums(x)
|
Arguments
x |
|
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the sum of
all individuals observed for each taxa in x.
See Also
Examples
1 2 3 4 |
Example output
-1 Bacteria
66.69027970 0.00458177
Prosthecochloris Chloroflexus
0.00082242 0.00232782
Dehalococcoides Thermus
0.00754172 0.00285077
Listeria Fusobacterium
0.00582994 0.03092906
Streptobacillus Brevibacillus
0.00351251 0.00107373
Acidobacteria_Gp1_Gp1 Paenibacillus
0.00221573 0.00530530
Bartonella Beijerinckia
0.00193928 0.00058589
Bradyrhizobium Brucella
0.00319319 0.00183319
Methylobacterium Mesorhizobium
0.00712897 0.00091167
Rhizobium Parvibaculum
0.00772734 0.00111923
Paracoccus Gluconacetobacter
0.00143452 0.00183311
Granulibacter Gemella
0.00116584 0.00348100
Azospirillum Macrococcus
0.00212196 0.00153754
Magnetospirillum Rhodospirillum
0.00181158 0.00166739
Staphylococcus Rickettsia
0.01391987 0.00421433
Pelagibacter Erythrobacter
0.00106001 0.00116605
Sphingobium Achromobacter
0.00134135 0.00146257
Bordetella Burkholderia
0.00573100 0.01305504
Cupriavidus Polynucleobacter
0.00484794 0.00104432
Ralstonia Acidovorax
0.00802453 0.00166620
Comamonas Delftia
0.00160896 0.00164925
Diaphorobacter Polaromonas
0.00271157 0.00236425
Rhodoferax Variovorax
0.00092722 0.00161902
Verminephrobacter Herminiimonas
0.00123459 0.00169237
Oxalobacter Leptothrix
0.03595129 0.00215029
Methylibium Thiomonas
0.00183416 0.00165329
Thiobacillus Methylobacillus
0.00224340 0.00105134
Neisseriaceae Chromobacterium
0.00175744 0.00228898
Kingella Laribacter
0.00119170 0.00211969
Abiotrophia Neisseria
0.00158194 0.01069643
Simonsiella Aerococcus
0.00054082 0.00195280
Nitrosomonas Nitrosospira
0.00147926 0.00061315
Azoarcus Thauera
0.00338705 0.00269011
Desulfotalea Desulfovibrio
0.00070496 0.22501930
Lawsonia Pelobacter
0.00457686 0.00362370
Geobacter Anaeromyxobacter
0.01038265 0.00650752
Syntrophus Granulicatella
0.00104040 0.00997710
Campylobacter Helicobacter
0.00979163 0.01119535
Aeromonas Tolumonas
0.00273002 0.00088996
Idiomarina Shewanella
0.00041954 0.00454837
Cardiobacterium Nitrosococcus
0.00186737 0.00099010
Enterococcus Thioalkalivibrio
0.20215118 0.00406134
Enterobacteriaceae Citrobacter
0.03431197 0.11959797
Cronobacter Dickeya
0.00330260 0.00274109
Edwardsiella Enterobacter
0.00437376 0.07410547
Erwinia Escherichia/Shigella
0.00221133 0.65034209
Klebsiella Lactobacillus
0.46276816 0.50420963
Pantoea Pectobacterium
0.00079598 0.00180255
Photorhabdus Proteus
0.00065805 0.00147246
Providencia Salmonella
0.00163626 0.01355244
Serratia Sodalis
0.00328415 0.00122985
Pediococcus Xenorhabdus
0.00386460 0.00039984
Yersinia Leuconostoc
0.00362060 0.00768765
Weissella Lactococcus
0.18048236 0.05569888
Pasteurellaceae Actinobacillus
0.00175222 0.00415967
Aggregatibacter Haemophilus
0.00782746 0.02737157
Histophilus Streptococcus
0.00216099 1.53568729
Pasteurella Acinetobacter
0.01052131 0.00704863
Enhydrobacter Azotobacter
0.00040129 0.00130359
Cellvibrio Pseudomonas
0.00054397 0.01181105
Clostridiales Aliivibrio
0.20497661 0.00077096
Photobacterium Vibrio
0.00033788 0.00187119
Stenotrophomonas Xanthomonas
0.00266772 0.00472843
Brachyspira Treponema
0.00998320 0.00697346
Aminobacterium Aminomonas
0.00089127 0.00285349
Pyramidobacter Acholeplasma
0.02298418 0.01216627
Entomoplasmataceae Mesoplasma
0.00546934 0.00471749
Mycoplasma Verrucomicrobia
0.02129199 0.00028319
Akkermansia Opitutus
1.09547762 0.00137480
Coraliomargarita Methanobrevibacter
0.00479792 0.35347676
Methanosphaera Methanocella
0.00499565 0.00130100
Cyanobacteria Family_XII_GpXII
0.00563133 0.00023162
Cyanobacteria_Family_XI_GpXI Family_IX_GpIX
0.00026107 0.00032015
Megasphaera Acidaminococcus
0.61969740 0.44110863
Mitsuokella Selenomonas
0.31806392 0.02559633
Veillonella Dialister
0.14110228 1.42272619
Ruminococcaceae Subdoligranulum
1.22978463 5.39863348
Faecalibacterium Acetivibrio
21.82419346 0.03524290
Anaerotruncus Ruminococcus
1.20128710 3.96077951
Alkaliphilus Clostridium
0.00497672 0.46526836
Symbiobacterium Thermincola
0.00627358 0.00008202
Desulfitobacterium Desulfotomaculum
0.00416770 0.00384273
Pelotomaculum Finegoldia
0.00268721 0.01089866
Peptoniphilus Parvimonas
0.00928805 0.00780893
Anaerococcus Syntrophomonas
0.01656429 0.00151672
Syntrophothermus Peptostreptococcaceae
0.00124377 0.06582446
Filifactor Sporacetigenium
0.00530569 0.23544929
Peptostreptococcus Heliobacterium
0.01759438 0.00641223
Lachnospiraceae Oribacterium
4.89072231 0.10640267
Coprococcus Roseburia
3.98779862 10.44074284
Catonella Dorea
0.02113814 4.75992985
Shuttleworthia Anaerostipes
0.01945653 0.63041585
Anaerofustis Eubacterium
0.00688658 2.66485726
Blautia Anaerosporobacter
39.70520018 0.01272877
Marvinbryantia Carboxydothermus
0.06137255 0.00158667
Caldicellulosiruptor Halothermothrix
0.00369963 0.00126804
Ammonifex Caldanaerobacter
0.00209591 0.00168344
Moorella Thermoanaerobacter
0.00287961 0.00622298
Bulleidia Catenibacterium
0.00651488 1.36332688
Coprobacillus Erysipelothrix
1.67292458 0.00244824
Holdemania Turicibacter
0.14611602 0.38261293
Bacteroides Porphyromonadaceae
54.20938123 0.00379938
Parabacteroides Porphyromonas
3.03194310 0.04402194
Prevotella Alistipes
12.74933479 6.61685718
Capnocytophaga Chryseobacterium
0.00515406 0.00278157
Croceibacter Zunongwangia
0.00090996 0.00135715
Cytophaga Dyadobacter
0.00097937 0.00156247
Bacillales Pedobacter
0.00130368 0.00114882
Sphingobacterium Alicyclobacillus
0.00298243 0.00301346
Actinomycetales Actinomyces
0.00141772 0.07261326
Mobiluncus Corynebacterium
0.00457600 0.02197762
Gordonia Nocardia
0.00075607 0.00111320
Anoxybacillus Rhodococcus
0.00107387 0.00319731
Bacillus Stackebrandtia
0.01325885 0.00104626
Brevibacterium Exiguobacterium
0.00060986 0.00259790
Kytococcus Geobacillus
0.00182472 0.00464483
Micrococcus Rothia
0.00322387 0.01824507
Xylanimonas Oceanobacillus
0.00173565 0.00120638
Propionibacterium Saccharopolyspora
0.02153265 0.00106482
Streptomyces Bifidobacterium
0.00411868 3.74026901
Gardnerella Parascardovia
0.00279001 0.00285583
Scardovia Atopobium
0.00133838 0.01725626
Collinsella Cryptobacterium
4.66666892 0.00280331
Eggerthella Gordonibacter
0.28623714 0.10806799
Slackia Acetobacter
0.11663171 0.00084421
Acidimicrobium Acidiphilium
0.00091850 0.00166701
Acidithiobacillus Acidobacteria_Gp3_Gp3
0.00108284 0.00083216
Acidothermus Actinosynnema
0.00086657 0.00129031
Aeromicrobium Aeropyrum
0.00130374 0.00016533
Afipia Alcanivorax
0.00096464 0.00054619
Alkalilimnicola Allochromatium
0.00164839 0.00190396
Alphaproteobacteria Alteromonas
0.00083168 0.00022626
Anaerobaculum Anaplasma
0.00068248 0.00193131
Aquifex Arcanobacterium
0.00043216 0.00089813
Archaeoglobus Arcobacter
0.00031853 0.00179208
Arsenophonus Arthrobacter
0.00084488 0.00257418
Azorhizobium Bdellovibrio
0.00143155 0.00055052
Beutenbergia Borrelia
0.00122149 0.00468069
Brachybacterium Bradyrhizobiaceae
0.00183860 0.00136004
Caldivirga Candidatus_Korarchaeum
0.00004825 0.00009704
Catenulispora Caulobacter
0.00108706 0.00487912
Cellulomonas Chitinophaga
0.00150291 0.00086849
Chlamydia Chlamydophila
0.00114372 0.00119118
Chlorobaculum Chlorobiaceae
0.00253600 0.00096597
Chlorobium Chloroherpeton
0.00869556 0.00068725
Chromohalobacter Clavibacter
0.00123739 0.00276325
Colwellia Conexibacter
0.00023036 0.00193241
Coprothermobacter Cyanobacteria_Family_II_GpIIa
0.00053690 0.00862041
Cyanobacteria_Family_II_GpIIb Cyanobacteria_Family_I_GpI
0.00073397 0.03298265
Deferribacter Dehalogenimonas
0.00100301 0.00146033
Deinococcus Denitrovibrio
0.00512927 0.00079607
Desulfatibacillum Desulfobacteraceae
0.00094861 0.00152385
Desulfobacterium Desulfohalobium
0.00058160 0.00119227
Desulfomicrobium Desulfurivibrio
0.00227261 0.00177949
Desulfurococcus Dichelobacter
0.00007140 0.00098868
Dictyoglomus Dinoroseobacter
0.00158857 0.00103994
Ehrlichia Ensifer
0.00135193 0.00299905
Family_X_GpX Ferribacterium
0.00041087 0.00130073
Ferroglobus Fervidobacterium
0.00012124 0.00060198
Fibrobacter Flavobacteriales
0.00269070 0.01042306
Flavobacterium Francisella
0.00215030 0.00191908
Frankineae Gammaproteobacteria
0.00257548 0.00180443
Gemmatimonas Geodermatophilus
0.00100541 0.00132499
Glaciecola Gluconobacter
0.00020200 0.00117723
Gramella Hahella
0.00085016 0.00044339
Haliangium Haloarcula
0.00144262 0.00044457
Halobacterium Haloferax
0.00083904 0.00092107
Halomicrobium Haloquadratum
0.00061407 0.00010531
Halorhabdus Halorhodospira
0.00046147 0.00171776
Halorubrum Haloterrigena
0.00055848 0.00061923
Halothiobacillus Herpetosiphon
0.00074708 0.00026781
Hirschia Hydrogenobacter
0.00035258 0.00033564
Hydrogenobaculum Hyperthermus
0.00041302 0.00011025
Hyphomicrobium Hyphomonas
0.00096455 0.00097486
Ignicoccus Jonesia
0.00016604 0.00056282
Jonquetella Kangiella
0.00365302 0.00043391
Kineococcus Kocuria
0.00141457 0.00171611
Kosmotoga Kribbella
0.00051101 0.00102494
Legionella Leifsonia
0.00084551 0.00120035
Leptospira Leptotrichia
0.00110206 0.00446508
Lysinibacillus Maricaulis
0.00078260 0.00096472
Marinobacter Marinomonas
0.00072927 0.00025965
Meiothermus Metallosphaera
0.00247036 0.00005663
Methanocaldococcus Methanococcoides
0.00109880 0.00026110
Methanococcus Methanocorpusculum
0.00247422 0.00094915
Methanoculleus Methanohalophilus
0.00082321 0.00026565
Methanomicrobiales Methanopyrus
0.00041484 0.00027488
Methanosaeta Methanosarcina
0.00023677 0.00068737
Methanosarcinaceae Methanosphaerula
0.00025048 0.00038901
Methanospirillum Methanothermobacter
0.00025372 0.00016949
Methylocella Methylococcus
0.00089414 0.00135627
Methylophilaceae Methylotenera
0.00035374 0.00048892
Methylovorus Moraxella
0.00103879 0.00048137
Mycobacterium Myxococcus
0.00767119 0.00137513
Nakamurella Nanoarchaeum
0.00110669 0.00014265
Natranaerobius Natrialba
0.00087487 0.00045822
Natronomonas Nautilia
0.00051895 0.00127648
Neorickettsia Nitratiruptor
0.00065119 0.00056253
Nitrobacter Nocardioides
0.00149979 0.00126654
Nocardiopsis Novosphingobium
0.00124495 0.00127104
Ochrobactrum Oenococcus
0.00073607 0.00097818
Orientia Parachlamydia
0.00043260 0.00034875
Persephonella Petrotoga
0.00062854 0.00059886
Phenylobacterium Phyllobacteriaceae
0.00171942 0.00085987
Picrophilus Pirellula
0.00017511 0.00039168
Planctomyces Propionivibrio
0.00032715 0.00110804
Proteobacteria Pseudoalteromonas
0.00232907 0.00030058
Psychrobacter Psychromonas
0.00083511 0.00033842
Pyrobaculum Pyrococcus
0.00075319 0.00031000
Renibacterium Rhizobiales
0.00035287 0.00041085
Rhodobacter Rhodobacteraceae
0.00507070 0.00070675
Rhodocista Rhodocyclaceae
0.00209089 0.00137622
Rhodopirellula Rhodopseudomonas
0.00024952 0.00377956
Rhodospirillaceae Rhodothermus
0.00058826 0.00275501
Robiginitalea Roseobacter
0.00230136 0.00059423
Roseomonas Rubrobacter
0.00208591 0.00193784
Ruegeria Saccharomonospora
0.00079294 0.00077462
Saccharophagus Salinibacter
0.00025332 0.00189348
Salinispora Sanguibacter
0.00146796 0.00126906
Sebaldella Segniliparus
0.00103754 0.00087044
Silicibacter Sorangium
0.00110343 0.00106457
Sphaerobacter Sphingobacteriales
0.00164840 0.00054822
Sphingomonas Sphingopyxis
0.00358193 0.00132144
Spirosoma Staphylothermus
0.00091596 0.00018541
Starkeya Streptosporangium
0.00169426 0.00114864
Sulfolobus Sulfurihydrogenibium
0.00037033 0.00170656
Sulfurimonas Sulfurospirillum
0.00058147 0.00041111
Sulfurovum Syntrophobacter
0.00072653 0.00093800
Teredinibacter Thermoanaerobacteraceae
0.00040461 0.00250954
Thermobifida Thermobispora
0.00100580 0.00137072
Thermococcus Thermocrinis
0.00110633 0.00031603
Thermodesulfovibrio Thermofilum
0.00104401 0.00016366
Thermomicrobia Thermomicrobium
0.00053701 0.00087099
Thermomonospora Thermoplasma
0.00166619 0.00026147
Thermoplasmatales Thermoprotei
0.00020915 0.00044554
Thermosipho Thermosphaera
0.00183152 0.00007803
Thermotoga Thiomicrospira
0.00220682 0.00043263
Tropheryma Truepera
0.00069540 0.00147649
Tsukamurella Ureaplasma
0.00092281 0.00299317
Waddlia Wolinella
0.00043304 0.00044917
Xanthobacter Xylella
0.00139448 0.00092236
Zymomonas Papillibacter
0.00107465 0.00156635
Anaerovorax Parasporobacterium
0.19550075 0.00302696
Chrysiogenes Solobacterium
0.00038058 0.06907566
Sarcina Olsenella
0.01279653 0.84990179
Lachnobacterium Anaeroglobus
0.10836429 0.00119452
Dysgonomonas Megamonas
0.00066549 0.36924016
Gallicola Sneathia
0.00009701 0.00116420
Victivallis Varibaculum
0.02512070 0.00203794
Solirubrobacter Allisonella
0.00324644 0.03193786
Tepidibacter Hespellia
0.19548199 0.46287809
Bryantella Mahella
0.11766296 0.00182728
Ethanoligenens Soehngenia
0.04034634 0.00333455
Acetanaerobacterium Peptococcus
0.04563573 0.02300247
Carnobacterium Rikenella
0.00006580 0.00052925
Odoribacter Acetitomaculum
0.30417135 0.00015691
Phascolarctobacterium Coriobacterium
0.48340852 0.00054267
Microbacterium Acetobacterium
0.00039525 0.00248405
Luteococcus Geosporobacter
0.00078195 0.00078618
Barnesiella Zymophilus
0.58559914 0.00128305
Howardella Sutterella
0.52128304 1.43979308
Succiniclasticum Lactonifactor
0.04664238 0.06331713
Moryella Sporobacter
0.00005176 0.04286789
Oscillibacter Pseudobutyrivibrio
3.40962830 0.80995294
Cloacibacillus Hallella
0.04595382 0.04136237
Anaerofilum Asaccharobacter
0.02120422 0.11645617
Xylanibacter Escherichia
0.21351285 0.02409152
Butyricimonas Paraprevotella
0.18390973 0.26952708
Parasutterella Enterorhabdus
0.69711948 0.00120235
Butyricicoccus Robinsoniella
0.39954970 0.01468759
Hydrogenoanaerobacterium Thermotalea
0.04365056 0.00106958
Paraeggerthella Anaerobacter
0.00196165 0.00227288
Desulfocurvus Fusibacter
0.01174536 0.03366236
Actinobaculum Asticcacaulis
0.00012901 0.00196820
Succinispira Butyrivibrio
0.00690521 0.01224009
Desulfonispora Syntrophococcus
0.00011498 0.07328654
Mogibacterium
0.01676015
59_8_22 59_5_13 59_8_12 65_3_22 65_5_1 65_1_10 65_7_12 59_6_1 65_2_17 65_9_26
74 2 15 3 1 1 14 1 10 3
65_5_18 65_7_5 65_8_12 65_9_1 59_9_26 9_6_28 65_7_4 65_4_26 9_2_24 65_1_17
1 2 1 3 4 1 7 1 1 3
65_6_7 9_4_3 65_7_18 65_8_7 59_4_5 59_5_2 65_6_2 65_4_10 9_7_25 9_4_5
1 1 1 3 3 9 20 5 7 3
65_1_8 65_2_5 59_7_6 59_9_31 9_1_7 9_4_13 9_6_3 65_4_5 59_9_18 65_9_13
2 4 96 16 1 1 2 1 7 4
65_3_18 65_6_10 9_7_18 65_8_25 59_3_5 65_8_29 65_4_20 59_6_11 59_9_17 9_4_6
9 1 1 2 1 2 1 1 8 6
59_4_25 59_3_21 59_3_19 59_4_16 59_8_3 59_5_19 65_9_9 59_2_6
11 8 1 1 4 66 2 217
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