| .onAttach |
Source code
|
| ChromosomeModels-class |
Man page
|
| GeneDependencyModel-class |
Man page
|
| GenomeModels-class |
Man page
|
| W.effects |
Man page
Source code
|
| [[ |
Man page
|
| [[,ChromosomeModels-method |
Man page
Man page
|
| [[,GenomeModels-method |
Man page
|
| [[<- |
Man page
|
| [[<-,ChromosomeModels-method |
Man page
|
| [[<-,GenomeModels-method |
Man page
|
| as.data.frame,ChromosomeModels-method |
Man page
|
| as.data.frame,GenomeModels-method |
Man page
|
| calculate.arm |
Source code
|
| calculate.arm.sparse |
Source code
|
| calculate.chr |
Source code
|
| calculate.chr.sparse |
Source code
|
| calculate.genome |
Source code
|
| calculate.genome.sparse |
Source code
|
| closest |
Source code
|
| dependency score plotting |
Man page
|
| findModel |
Man page
|
| findModel,ChromosomeModels-method |
Man page
|
| findModel,GenomeModels-method |
Man page
|
| fit.byname |
Man page
|
| fit.cgh.mir.byname |
Man page
Source code
|
| fit.cgh.mrna.byname |
Man page
Source code
|
| fixed.window |
Man page
|
| geneCopyNum |
Man page
|
| geneExp |
Man page
|
| get.neighboring.probes |
Man page
|
| get.neighs |
Man page
|
| getArm |
Man page
|
| getArm,ChromosomeModels-method |
Man page
|
| getArm,GeneDependencyModel-method |
Man page
|
| getChromosome |
Man page
|
| getChromosome,ChromosomeModels-method |
Man page
|
| getChromosome,GeneDependencyModel-method |
Man page
|
| getGeneName |
Man page
|
| getGeneName,ChromosomeModels-method |
Man page
|
| getGeneName,GeneDependencyModel-method |
Man page
|
| getLoc |
Man page
|
| getLoc,ChromosomeModels-method |
Man page
|
| getLoc,GeneDependencyModel-method |
Man page
|
| getModelMethod |
Man page
|
| getModelMethod,ChromosomeModels-method |
Man page
|
| getModelMethod,GenomeModels-method |
Man page
|
| getModelNumbers |
Man page
|
| getModelNumbers,ChromosomeModels-method |
Man page
|
| getModelNumbers,GenomeModels-method |
Man page
|
| getPArm |
Man page
|
| getPArm,ChromosomeModels-method |
Man page
|
| getParams |
Man page
|
| getParams,ChromosomeModels-method |
Man page
|
| getParams,GenomeModels-method |
Man page
|
| getQArm |
Man page
|
| getQArm,ChromosomeModels-method |
Man page
|
| getScore |
Man page
|
| getScore,ChromosomeModels-method |
Man page
|
| getScore,GeneDependencyModel-method |
Man page
|
| getWindowSize |
Man page
|
| getWindowSize,ChromosomeModels-method |
Man page
|
| getWindowSize,GeneDependencyModel-method |
Man page
|
| getWindowSize,GenomeModels-method |
Man page
|
| getZ,GeneDependencyModel-method |
Man page
|
| isEmpty |
Man page
|
| isEmpty,ChromosomeModels-method |
Man page
Man page
|
| iterative.window |
Man page
|
| join.top.regions |
Man page
|
| matrix.print |
Source code
|
| order.feature.info |
Man page
|
| orderGenes |
Man page
|
| orderGenes,ChromosomeModels-method |
Man page
|
| orderGenes,GenomeModels-method |
Man page
|
| pick.chr.arm |
Source code
|
| pint.data |
Man page
Source code
|
| pint.match |
Man page
Source code
|
| plot.ChromosomeModels |
Man page
Source code
|
| plot.GeneDependencyModel |
Man page
Source code
|
| plot.GenomeModels |
Man page
Source code
|
| screen.cgh.mir |
Man page
Source code
|
| screen.cgh.mrna |
Man page
Source code
|
| setArm<- |
Man page
|
| setArm<-,GeneDependencyModel-method |
Man page
|
| setChromosome<- |
Man page
|
| setChromosome<-,GeneDependencyModel-method |
Man page
|
| setGeneName<- |
Man page
|
| setGeneName<-,GeneDependencyModel-method |
Man page
|
| setLoc<- |
Man page
|
| setLoc<-,GeneDependencyModel-method |
Man page
|
| sparse.window |
Man page
|
| summarize.region.parameters |
Man page
|
| test.segmented |
Source code
|
| topGenes |
Man page
|
| topGenes,ChromosomeModels-method |
Man page
|
| topGenes,GenomeModels-method |
Man page
|
| topModels |
Man page
|
| topModels,ChromosomeModels-method |
Man page
|
| topModels,GenomeModels-method |
Man page
|
| z.effects |
Man page
Source code
|
