Man pages for pint
Pairwise INTegration of functional genomics data
| ChromosomeModels-class | Class "ChromosomeModels" |
| fit.byname | Fit dependency model around one gene between two data sets. |
| geneCopyNum | Gene copy number data in chromosome 17 |
| GeneDependencyModel-class | Class "GeneDependencyModel" |
| geneExp | Gene expression data in chromosome 17 |
| GenomeModels-class | Class "GenomeModels" |
| get.neighboring.probes | Get neighboring probes |
| get.neighs | get.neighs |
| join.top.regions | Merge the overlapping top chromosomal regions. |
| order.feature.info | Order the gene information table by chromosomal locations. |
| pint.data | Forms a data set and pairs samples in two data sets. |
| plot | Dependency score plotting |
| screen | Fits dependency models to chromosomal arm, chromosome or the... |
| summarize.region.parameters | Summarize overlapping models. |
| window | Form data with a selected window size for the model fitting |
| z.effect | The model parameters z and W |
