Man pages for plyranges
A fluent interface for manipulating GenomicRanges
| add-nearest-distance | Add distance to nearest neighbours between two Ranges objects |
| as_ranges | Coerce an Rle or RleList object to Ranges |
| compute_coverage | Compute coverage over a Ranges object |
| element-setops | Row-wise set operations on Ranges objects |
| filter-ranges | Subset a 'Ranges' object |
| group_by-ranges | Group a Ranges by one or more variables |
| io-bam-read | Read a BAM file |
| io-bed-read | Read a BED or BEDGraph file |
| io-bed-write | Write a BED or BEDGraph file |
| io-bigwig-read | Read a BigWig file |
| io-bigwig-write | Write a BigWig file |
| io-gff-read | Read a GFF/GTF/GVT file |
| io-gff-write | Write a GFF(123) file |
| io-wig-read | Read a WIG file |
| io-wig-write | Write a WIG file |
| mutate-ranges | Modify a Ranges object |
| n | Compute the number of ranges in each group. |
| n_distinct | Compute the number of distinct unique values in a vector or... |
| overlap-joins | Join by overlapping Ranges |
| overscope_ranges | Create an overscoped environment from a Ranges object |
| plyranges-package | plyranges: a grammar of genomic data manipulation |
| ranges-anchor | Anchored Ranges objects |
| ranges-arrange | Sort a Ranges object |
| ranges-bind | Combine Ranges by concatentating them together |
| ranges-chop | Group a GRanges object by introns or gaps |
| ranges-class | An abstract class to represent operations performed over a... |
| ranges-construct | Construct a I/GRanges object from a tibble or data.frame |
| ranges-count-overlaps | Count the number of overlaps between two Ranges objects |
| ranges-deferred | DeferredGenomiRanges objects |
| ranges-disjoin | Disjoin then aggregate a Ranges object |
| ranges-expand | Expand list-columns in a Ranges object |
| ranges-filter-overlaps | Filter by overlapping/non-overlapping ranges |
| ranges-flank | Generate flanking regions |
| ranges-follow | Find following Ranges |
| ranges-info | Construct annotation information |
| ranges-interweave | Interweave a pair of Ranges objects together |
| ranges-names | Tools for working with named Ranges |
| ranges-nearest | Find nearest neighbours between two Ranges objects |
| ranges-overlaps | Find overlap between two Ranges |
| ranges-overlaps-self | Find overlaps within a Ranges object |
| ranges-pairs | Pair together two ranges objects |
| ranges-precede | Find preceding Ranges |
| ranges-reduce | Reduce then aggregate a Ranges object |
| ranges-select | Select metadata columns of the Ranges object by name or... |
| ranges-setops | Vector-wise Range set-operations |
| ranges-setters | Functional setters for Ranges objects |
| ranges-shift | Shift all coordinates in a genomic interval left or right,... |
| ranges-summarise | Reduce multiple values in a Ranges down to a single value |
| ranges-tile | Slide or tile over a Ranges object |
| slice-ranges | Choose rows by their position |
| stretch | Stretch a genomic interval |
| tidyverse-reexports | Objects exported from other packages. |
