get_reads: get sequencing reads from fragments
In polyester: Simulate RNA-seq reads

Description Usage Arguments Value See Also Examples

simulate the sequencing process by returning the sequence of one or both ends of provided fragments

1	get_reads(tFrags, readlen, paired = TRUE)

`tFrags`	DNAStringSet representing fragments
`readlen`	Read length.
`paired`	If `FALSE`, return only the first `readlen` bases of each element of `tFrags` in the result; if `TRUE`, also return last `readlen` bases.

DNAStringSet representing simulated RNA-seq reads

simulate_experiment, simulate_experiment_countmat

  library(Biostrings)
  data(srPhiX174)
  set.seed(174)
  srPhiX174_reads = get_reads(srPhiX174, readlen=15, paired=FALSE)
  srPhiX174_reads  
  # set of single-end, 15bp reads, treating srPhiX174 as the fragments